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See other AGPAT1 CNV Assays ›
Gene Symbol
AGPAT1
Assay Reference Genome
Location

Chr.6:32168681 on build GRCh38
Cytoband
6p21.32
Assay ID Hs00604604_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10554

Gene Name:

 1-acylglycerol-3-phosphate O-acyltransferase 1

Gene Aliases:

 1-AGPAT1, G15, LPAAT-alpha, LPAATA

Location:

 Chr.6:32168206-32178111 on Build GRCh38

Assay Gene Location:

 Within Exon 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGPAT1 NM_006411.3 7 1782 NP_006402.1
NM_032741.4 7 1567 NP_116130.2
XM_005248805.3 7 2085 XP_005248862.1
XM_005248806.2 7 1978 XP_005248863.1
XM_011514234.1 7 1749 XP_011512536.1
AF007145.1 7 1068 AAC19153.1
AF218034.1 7 1545 AAG17276.1
AK056346.1 5 1979
AK058025.1 9 1550
AK129818.1 7 1528
BC002402.2 7 1521 AAH02402.1
BC003007.1 7 1521 AAH03007.1
BC004310.1 7 1726 AAH04310.1
BC090849.1 7 1738 AAH90849.1
BM763275.1 1 350
U56417.1 7 1765 AAB58775.1
U75971.1 6 1456 AAB96378.1
Y09565.1 7 1556 CAA70758.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss PRRT1 AGER AGPAT1 ATF6B TNXB FKBPL RNF5 GPSM3 MIR6833 PPT2-EGFL8 LOC100507547 NOTCH4 EGFL8 MIR6721 PPT2 PBX2
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss PRRT1 AGER TNXB GPSM3 C4B HLA-DRA CYP21A2 PPT2-EGFL8 LOC100507547 HLA-DRB5 BTNL2 TNXA HLA-DQA2 CYP21A1P EGFL8 PPT2 PBX2 HLA-DQB2 AGPAT1 ATF6B FKBPL RNF5 HLA-DQB1-AS1 HLA-DRB1 C4A MIR6833 MIR3135B C6orf10 HLA-DQA1 LOC101929163 NOTCH4 HCG23 MIR6721 HLA-DRB6 HLA-DQB1
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss AGER GPSM3 C4B C6orf48 CYP21A2 MIR1236 LOC100507547 BTNL2 CYP21A1P EGFL8 ZBTB12 PBX2 ATF6B FKBPL RNF5 HLA-DQB1-AS1 C2-AS1 HSPA1B HLA-DRB1 C4A C2 C6orf10 STK19 LOC101929163 MIR6721 NELFE HLA-DRB6 HLA-DQB1 PRRT1 SNORD48 TNXB SKIV2L HSPA1A DXO HLA-DRA SNORD52 PPT2-EGFL8 EHMT2 HLA-DRB5 TNXA PPT2 CFB AGPAT1 NEU1 SLC44A4 MIR6833 HLA-DQA1 NOTCH4 HCG23
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss PRRT1 AGER TNXB SKIV2L GPSM3 DXO C4B CYP21A2 MIR1236 PPT2-EGFL8 LOC100507547 TNXA CYP21A1P EGFL8 PPT2 CFB PBX2 AGPAT1 ATF6B FKBPL RNF5 C2-AS1 C4A C2 MIR6833 STK19 NOTCH4 MIR6721 NELFE
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion ATP6V1G2 AGER LY6G5B VARS LY6G6D MSH5-SAPCD1 LY6G5C DDX39B-AS1 SNORD117 GPSM3 C4B C6orf48 CYP21A2 MIR1236 BAG6 LOC100507547 BTNL2 ABHD16A CYP21A1P VWA7 SAPCD1-AS1 EGFL8 LSM2 ZBTB12 DDX39B TNF PBX2 AIF1 ATF6B APOM FKBPL RNF5 C2-AS1 HCP5 HSPA1B HLA-DRB1 C4A LOC100287329 SAPCD1 C2 C6orf10 STK19 LOC101929163 ATP6V1G2-DDX39B NFKBIL1 LTB LTA LY6G6E NCR3 MIR6721 SNORD84 NELFE HLA-DRB6 PRRT1 SNORD48 TNXB CLIC1 SKIV2L HSPA1A LOC102725068 DXO HLA-DRA LY6G6F SNORD52 MSH5 PPT2-EGFL8 EHMT2 HLA-DRB5 TNXA MIR4646 LY6G6C DDAH2 PPT2 CFB PRRC2A HCG26 SNORA38 C6orf47 AGPAT1 LST1 NEU1 CSNK2B SLC44A4 MIR6833 MCCD1 GPANK1 C6orf25 NOTCH4 MICB MIR6832 HCG23 HSPA1L
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion AGER VARS LY6G6D LY6G5C DDX39B-AS1 GPSM3 MIR5004 C4B C6orf48 MIR1236 ABHD16A HLA-DMB HLA-DQA2 CYP21A1P COL11A2 SAPCD1-AS1 EGFL8 DDX39B PBX2 HLA-DQB2 ATF6B C2-AS1 HSPA1B LOC100287329 SAPCD1 HCG25 BRD2 ATP6V1G2-DDX39B RXRB NFKBIL1 LTA DAXX LY6G6E HLA-DPB1 MIR6721 SNORD84 HLA-DRB6 HLA-DQB1 PRRT1 SNORD48 SKIV2L LOC102725068 HLA-DOB TAP2 HLA-DRB5 TNXA ZBTB22 MIR6834 CFB PRRC2A SNORA38 C6orf47 AGPAT1 LST1 HLA-DOA SLC44A4 PHF1 GPANK1 RGL2 WDR46 PSMB8-AS1 TAP1 HSPA1L HLA-DPA1 ATP6V1G2 LY6G5B MSH5-SAPCD1 SNORD117 KIFC1 CYP21A2 BAG6 LOC100507547 BTNL2 VWA7 LSM2 ZBTB12 TNF AIF1 APOM FKBPL VPS52 RNF5 PSMB9 PSMB8 HLA-DQB1-AS1 HCP5 HLA-DRB1 C4A C2 MIR3135B C6orf10 RPS18 CUTA STK19 LOC101929163 ZBTB9 LTB HCG24 NCR3 NELFE TAPBP RING1 TNXB CLIC1 HSPA1A DXO HLA-DRA HLA-DMA LY6G6F SNORD52 HSD17B8 MSH5 PPT2-EGFL8 EHMT2 MIR6873 B3GALT4 MIR4646 LY6G6C LOC100294145 DDAH2 PPT2 SYNGAP1 HLA-DPB2 HCG26 NEU1 CSNK2B PPP1R2P1 MIR219A1 PFDN6 SLC39A7 MIR6833 MCCD1 HLA-DQA1 C6orf25 NOTCH4 MICB MIR6832 HCG23
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss PRRT1 AGER AGPAT1 ATF6B TNXB FKBPL RNF5 GPSM3 MIR6833 PPT2-EGFL8 LOC100507547 NOTCH4 EGFL8 MIR6721 PPT2 PBX2
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion AGER VARS LY6G6D LY6G5C DDX39B-AS1 GPSM3 MIR5004 C4B C6orf48 MIR1236 ABHD16A HLA-DMB HLA-DQA2 CYP21A1P COL11A2 SAPCD1-AS1 EGFL8 DDX39B PBX2 HLA-DQB2 ATF6B C2-AS1 HSPA1B LOC100287329 SAPCD1 HCG25 BRD2 ATP6V1G2-DDX39B RXRB NFKBIL1 LTA DAXX LY6G6E HLA-DPB1 MIR6721 SNORD84 HLA-DRB6 HLA-DQB1 PRRT1 SNORD48 SKIV2L LOC102725068 HLA-DOB TAP2 HLA-DRB5 TNXA ZBTB22 MIR6834 CFB PRRC2A SNORA38 C6orf47 AGPAT1 LST1 HLA-DOA SLC44A4 PHF1 GPANK1 RGL2 WDR46 PSMB8-AS1 TAP1 HSPA1L HLA-DPA1 ATP6V1G2 LY6G5B MSH5-SAPCD1 SNORD117 KIFC1 CYP21A2 BAG6 LOC100507547 BTNL2 VWA7 LSM2 ZBTB12 TNF AIF1 APOM FKBPL VPS52 RNF5 PSMB9 PSMB8 HLA-DQB1-AS1 HCP5 HLA-DRB1 C4A C2 MIR3135B C6orf10 RPS18 CUTA STK19 LOC101929163 ZBTB9 LTB HCG24 NCR3 NELFE TAPBP RING1 TNXB CLIC1 HSPA1A DXO HLA-DRA HLA-DMA LY6G6F SNORD52 HSD17B8 MSH5 PPT2-EGFL8 EHMT2 MIR6873 B3GALT4 MIR4646 LY6G6C LOC100294145 DDAH2 PPT2 SYNGAP1 HLA-DPB2 HCG26 NEU1 CSNK2B PPP1R2P1 MIR219A1 PFDN6 SLC39A7 MIR6833 MCCD1 HLA-DQA1 C6orf25 NOTCH4 MICB MIR6832 HCG23
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss ATP6V1G2 AGER LY6G5B VARS LY6G6D MSH5-SAPCD1 LY6G5C DDX39B-AS1 SNORD117 GPSM3 C4B C6orf48 CYP21A2 MIR1236 BAG6 LOC100507547 BTNL2 ABHD16A CYP21A1P VWA7 SAPCD1-AS1 EGFL8 LSM2 ZBTB12 DDX39B TNF PBX2 AIF1 MICA ATF6B APOM FKBPL RNF5 C2-AS1 HCP5 HSPA1B C4A LOC100287329 SAPCD1 C2 C6orf10 MIR6891 STK19 LOC101929163 ATP6V1G2-DDX39B NFKBIL1 LTB LTA LY6G6E NCR3 MIR6721 SNORD84 NELFE PRRT1 HLA-B SNORD48 TNXB CLIC1 SKIV2L HSPA1A LOC102725068 DXO HLA-DRA LY6G6F SNORD52 MSH5 PPT2-EGFL8 EHMT2 TNXA MIR4646 LY6G6C DDAH2 PPT2 CFB PRRC2A HCG26 SNORA38 C6orf47 AGPAT1 LST1 NEU1 CSNK2B SLC44A4 MIR6833 MCCD1 GPANK1 C6orf25 NOTCH4 MICB MIR6832 HCG23 HSPA1L

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