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See other TRIM39 CNV Assays ›
Gene Symbol
TRIM39
Assay Reference Genome
Location

Chr.6:30335968 on build GRCh38
Cytoband
6p22.1
Assay ID Hs00604937_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 56658

Gene Name:

 tripartite motif containing 39

Gene Aliases:

 RNF23, TFP, TRIM39B

Location:

 Chr.6:30326844-30343729 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 6 - Intron 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM39 NM_021253.3 NP_067076.2
NM_172016.2 NP_742013.1
AB046381.1 BAB16374.1
AK292512.1
AX776007.1 CAE11703.1
BC007661.2 AAH07661.1
BC034985.1 AAH34985.1
BT007370.1 AAP36034.1

Target Gene Details

Entrez Gene ID:

 202658

Gene Name:

 TRIM39-RPP21 readthrough

Gene Aliases:

 TRIM39R

Location:

 Chr.6:30329311-30346858 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 3 - Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM39-RPP21 NM_001199119.1 NP_001186048.1
AI805914.1
EU012025.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion PRR3 VARS2 PSORS1C2 SNORD32B OR2H2 GTF2H4 PPP1R11 OR12D2 GNL1 MAS1L IFITM4P HLA-G HLA-B ZFP57 OR5V1 HLA-F-AS1 PPP1R10 TUBB HCG18 RNF39 MDC1-AS1 OR2H1 LINC01015 ATAT1 PPP1R18 FLOT1 HCG20 C6orf136 TRIM10 MOG HLA-K TRIM26 POU5F1 HLA-H DDR1 PSORS1C1 LOC554223 HCG4 OR12D3 TRIM39 HLA-E TRIM39-RPP21 TCF19 MICA MDC1 DPCR1 DHX16 HLA-C TRIM40 SFTA2 HCG4B LINC00243 NRM MIR877 OR14J1 OR10C1 CDSN CCHCR1 C6orf15 HCG9 LOC101929006 HCG22 PSORS1C3 UBD RPP21 ABCF1 IER3 HCG27 OR2J2 TRIM31-AS1 MRPS18B LOC105375014 ZNRD1 TRIM31 OR11A1 HLA-F MIR4640 MUC22 GABBR1 MIR6891 HLA-J ZNRD1ASP MUC21 HCG8 HLA-L TRIM15 HCG17 HLA-A
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion PRR3 VARS2 PSORS1C2 SNORD32B OR2H2 GTF2H4 PPP1R11 OR12D2 GNL1 MAS1L IFITM4P HLA-G ZFP57 OR2W1 OR5V1 HLA-F-AS1 HCG14 PPP1R10 TUBB HCG18 RNF39 MDC1-AS1 OR2H1 LINC01015 ATAT1 PPP1R18 FLOT1 HCG20 TRIM27 C6orf136 TRIM10 MOG HLA-K OR2B3 TRIM26 POU5F1 HLA-H DDR1 HCG16 PSORS1C1 LOC554223 HCG4 OR12D3 TRIM39 LINC00533 HLA-E TRIM39-RPP21 TCF19 MDC1 DPCR1 DHX16 TRIM40 SFTA2 HCG4B LINC00243 NRM MIR877 OR14J1 OR10C1 CDSN ZNF311 CCHCR1 C6orf15 HCG9 LOC101929006 HCG22 LINC01556 PSORS1C3 UBD RPP21 LOC100129636 ABCF1 IER3 HCG27 OR2J2 TRIM31-AS1 MRPS18B LOC105375014 LINC01623 ZNRD1 TRIM31 OR11A1 HLA-F MIR4640 MUC22 GABBR1 HLA-J ZNRD1ASP MUC21 HCG8 HLA-L TRIM15 OR2J3 HCG17 HLA-A
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion PRR3 VARS2 PSORS1C2 GTF2H4 PPP1R11 GNL1 IFITM4P HLA-G HLA-F-AS1 PPP1R10 TUBB HCG18 RNF39 MDC1-AS1 ATAT1 PPP1R18 FLOT1 HCG20 C6orf136 TRIM10 HLA-K TRIM26 POU5F1 HLA-H DDR1 PSORS1C1 LOC554223 HCG4 TRIM39 HLA-E TRIM39-RPP21 TCF19 MDC1 DPCR1 DHX16 HLA-C TRIM40 SFTA2 HCG4B LINC00243 NRM MIR877 CDSN CCHCR1 C6orf15 HCG9 HCG22 PSORS1C3 RPP21 ABCF1 IER3 HCG27 TRIM31-AS1 MRPS18B LOC105375014 ZNRD1 TRIM31 HLA-F MIR4640 MUC22 HLA-J ZNRD1ASP MUC21 HCG8 HLA-L TRIM15 HCG17 HLA-A
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss PRR3 VARS2 PSORS1C2 GTF2H4 PPP1R11 GNL1 PPP1R10 TUBB HCG18 RNF39 MDC1-AS1 ATAT1 PPP1R18 FLOT1 HCG20 C6orf136 TRIM10 HLA-K TRIM26 POU5F1 HLA-H DDR1 PSORS1C1 TRIM39 HLA-E TRIM39-RPP21 TCF19 MDC1 DPCR1 DHX16 HLA-C TRIM40 SFTA2 HCG4B LINC00243 NRM MIR877 CDSN CCHCR1 C6orf15 HCG9 HCG22 PSORS1C3 RPP21 ABCF1 IER3 HCG27 TRIM31-AS1 MRPS18B LOC105375014 ZNRD1 TRIM31 MIR4640 MUC22 HLA-J ZNRD1ASP MUC21 HCG8 HLA-L TRIM15 HCG17 HLA-A
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication PRR3 VARS2 PSORS1C2 GTF2H4 PPP1R11 GNL1 HLA-B HCG26 PPP1R10 TUBB HCG18 RNF39 MDC1-AS1 ATAT1 PPP1R18 FLOT1 HCG20 LOC102725068 C6orf136 TRIM10 TRIM26 POU5F1 DDR1 PSORS1C1 TRIM39 HLA-E TRIM39-RPP21 TCF19 MICA MDC1 DPCR1 DHX16 HLA-C TRIM40 SFTA2 LINC00243 NRM MIR877 CDSN CCHCR1 C6orf15 HCG22 PSORS1C3 RPP21 ABCF1 IER3 HCG27 TRIM31-AS1 MRPS18B LOC105375014 ZNRD1 TRIM31 MIR4640 MUC22 HCP5 MIR6891 HLA-J ZNRD1ASP MUC21 HCG8 HLA-L TRIM15 HCG17
nsv5241 Chr.6:30333124 - 30367656 on Build GRCh38 Insertion TRIM39 RPP21 TRIM39-RPP21

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