Hs00647545_cn

• Gene Symbol: PCDHGA1
• Assay Reference Genome Location: Chr.5:141355285 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56114
• Gene Name: protocadherin gamma subfamily A, 1
• Gene Aliases: PCDH-GAMMA-A1
• Location: Chr.5:141330685-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA1	NM_018912.2			NP_061735.1
	AF152318.1			AAD43712.1

Target Gene Details

• Entrez Gene ID: 56113
• Gene Name: protocadherin gamma subfamily A, 2
• Gene Aliases: PCDH-GAMMA-A2
• Location: Chr.5:141338760-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA2	NM_018915.3			NP_061738.1
	AF152322.1			AAD43716.1

Target Gene Details

• Entrez Gene ID: 56112
• Gene Name: protocadherin gamma subfamily A, 3
• Gene Aliases: PCDH-GAMMA-A3
• Location: Chr.5:141344034-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA3	NM_018916.3			NP_061739.2
	AB208927.1			BAD92164.1
	AF152323.1			AAD43717.1

Target Gene Details

• Entrez Gene ID: 56111
• Gene Name: protocadherin gamma subfamily A, 4
• Gene Aliases: PCDH-GAMMA-A4
• Location: Chr.5:141355025-141512979 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGA4	NM_018917.3	1	261	NP_061740.2
	NM_032053.2	1	261	NP_114442.2
	AF152324.1	1	85	AAD43718.1
	AF152511.1	1	85	AAD43771.1
	DA392480.1	1	269

Target Gene Details

• Entrez Gene ID: 56104
• Gene Name: protocadherin gamma subfamily B, 1
• Gene Aliases: PCDH-GAMMA-B1
• Location: Chr.5:141350261-141512979 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHGB1	NM_018922.2			NP_061745.1
	AF152330.1			AAD43724.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHGA10 TAF7 PCDHGA6 PCDHB5 PCDHA2 PCDHGB8P PCDHA5 PCDHA6 PCDHA10 PCDHGA2 PCDHB19P PCDHGB5 PCDHB4 PCDHGA9 PCDHGA4 PCDHGA11 PCDHGA3 LOC101926905 PCDHA8 PCDHA9 PCDHA4 PCDHB15 PCDHB17P PCDHB10 PCDHB11 PCDHGB2 PCDHB3 PCDHGB3 PCDHAC1 PCDHGB1 PCDHB8 PCDHGA7 PCDHB18P PCDHA3 PCDHB14 PCDHGA5 PCDHB2 PCDHGA1 PCDHA11 PCDHB1 PCDHB7 PCDHB9 PCDHB6 SLC25A2 PCDHB16 PCDHA7 PCDHGB7 PCDHA1 PCDHGA12 PCDHA12 PCDHAC2 PCDHGA8 PCDHA13 PCDHB12 PCDHGB4 PCDHGB6 PCDHB13
esv3606982	Chr.5:141352280 - 141361411 on Build GRCh38	Loss	PCDHGA2 PCDHGA4 PCDHGB1 PCDHGA1 PCDHGA3 PCDHGB2
nsv599922	Chr.5:141341879 - 141416532 on Build GRCh38	Loss	PCDHGA5 PCDHGA10 PCDHGA8 PCDHGA6 PCDHGA1 PCDHGB2 PCDHGB4 PCDHGA2 PCDHGB3 PCDHGB6 PCDHGB5 PCDHGA9 PCDHGA4 PCDHGB1 PCDHGA7 PCDHGA3

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

homophilic cell adhesion via plasma membrane adhesion molecules
endosome to lysosome transport
lipid tube assembly involved in organelle fusion

Function(s)

calcium ion binding