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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89739133 on build GRCh38
Cytoband
16q24.3
Assay ID Hs00686181_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 43 - Exon 43
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
X99226.1 CAA67610.1

Target Gene Details

Entrez Gene ID:

 92822

Gene Name:

 zinc finger protein 276

Gene Aliases:

 CENP-Z, CENPZ, ZADT, ZFP276, ZNF477

Location:

 Chr.16:89720368-89740925 on Build GRCh38

Assay Gene Location:

 Within Exon 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ZNF276 NM_001113525.1 11 2829 NP_001106997.1
NM_152287.3 11 2819 NP_689500.2
NR_110122.1 11 2904
NR_110126.1 11 2787
NR_110128.1 11 2710
NR_110129.1 11 2799
XM_017023890.1 10 2754 XP_016879379.1
AK056405.1 11 2855
AK096004.1 1 591
BC107603.1 11 2644 AAI07604.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion ZNF276 VPS9D1-AS1 VPS9D1 FANCA
nsv573744 Chr.16:89738447 - 89915950 on Build GRCh38 Loss ZNF276 TCF25 LOC107984817 LOC105371419 SPIRE2 FANCA
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion ZNF276 SPATA2L VPS9D1-AS1 CDK10 VPS9D1 FANCA
nsv573743 Chr.16:89664419 - 89853617 on Build GRCh38 Gain ZNF276 SPATA2L VPS9D1-AS1 CDK10 SPATA33 VPS9D1 LOC107984817 LOC105371419 SPIRE2 FANCA
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss SPATA2L VPS9D1-AS1 CDK10 SPATA33 GAS8-AS1 CENPBD1 LOC107984817 LOC105371419 AFG3L1P CHMP1A FANCA DPEP1 TUBB3 ZNF276 TCF25 MC1R DBNDD1 VPS9D1 SPIRE2 DEF8 GAS8
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss LOC100287036 VPS9D1-AS1 SPATA33 URAHP CENPBD1 LOC107984817 CHMP1A FANCA FAM157C DBNDD1 VPS9D1 RPL13 SPIRE2 DEF8 SNORD68 GAS8 TUBB8P7 CPNE7 LOC105371414 LOC101927817 ZNF778 SPATA2L CDK10 GAS8-AS1 LOC105371419 AFG3L1P DPEP1 SPG7 TUBB3 ZNF276 TCF25 MC1R ANKRD11 PRDM7
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss ZNF276 LOC107984817 LOC105371419 SPIRE2 FANCA
nsv833330 Chr.16:89678466 - 89741783 on Build GRCh38 Loss ZNF276 SPATA2L VPS9D1-AS1 CDK10 VPS9D1 FANCA
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss LOC107987238 SNAI3 LOC339059 VPS9D1-AS1 SPATA33 CENPBD1 CHMP1A FAM157C DBNDD1 CDH15 DEF8 GAS8 TUBB8P7 CPNE7 LOC101927817 ZNF778 SPATA2L RNF166 GAS8-AS1 LOC105371419 LINC00304 DPEP1 TUBB3 ACSF3 TCF25 LOC400558 MC1R MVD LOC100289580 TRAPPC2L LOC105371409 LOC100287036 LOC101927793 CDT1 PIEZO1 URAHP LOC100129697 CBFA2T3 LOC107984817 PABPN1L FANCA VPS9D1 GALNS RPL13 SPIRE2 SNORD68 IL17C LOC105371414 SLC22A31 CDK10 CTU2 AFG3L1P SPG7 ZNF276 APRT MIR4722 CYBA SNAI3-AS1 ANKRD11 PRDM7
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion SPATA2L VPS9D1-AS1 CDK10 SPATA33 CHMP1A FANCA DPEP1 SPG7 ZNF276 VPS9D1 RPL13 SNORD68 CPNE7

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