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See other SHMT2 CNV Assays ›
Gene Symbol
SHMT2
Assay Reference Genome
Location

Chr.12:57232257 on build GRCh38
Cytoband
12q13.3
Assay ID Hs00696976_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 6472

Gene Name:

 serine hydroxymethyltransferase 2

Gene Aliases:

 GLYA, HEL-S-51e, SHMT

Location:

 Chr.12:57229573-57234935 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 7 - Intron 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SHMT2 NM_001166356.1 NP_001159828.1
NM_001166357.1 NP_001159829.1
NM_001166358.1 NP_001159830.1
NM_001166359.1 NP_001159831.1
NM_005412.5 NP_005403.2
NR_029415.1
NR_029416.1
NR_029417.1
NR_048562.1
XM_011538675.2 XP_011536977.1
XM_011538676.2 XP_011536978.1
XM_011538677.2 XP_011536979.1
XM_011538678.2 XP_011536980.1
AK055053.1 3 1255
AK223555.1 BAD97275.1
AK295941.1
AK296183.1
AK297173.1
AK298231.1
AK301339.1
AK301443.1
AK303827.1
AK315916.1
BC011911.2 AAH11911.1
BC013677.2 AAH13677.1
BC032584.1 AAH32584.1
BC044211.1 AAH44211.1
BC091501.1 AAH91501.1
BT006866.1 AAP35512.1
BX647711.1 CAI46021.1
BX648847.1
CN395976.1
EU668344.1
KU178333.1
KU178334.1
L11932.1 AAA63258.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482992 Chr.12:56206217 - 57706217 on Build GRCh38 Gain+Loss NEMP1 GLI1 SHMT2 SPRYD4 CS ATP5B PIP4K2C STAT6 B4GALNT1 ARHGEF25 SLC26A10 R3HDM2 BAZ2A MIP IL23A NAB2 TIMELESS APOF NACA NABP2 NDUFA4L2 INHBC MYO1A LRP1 OS9 HBCBP PTGES3 NXPH4 SLC39A5 MIR1228 CNPY2 ZBTB39 PAN2 RDH16 MIR616 INHBE SNORA105C COQ10A SNORD59B SNORD59A DCTN2 GLS2 LOC101927583 SDR9C7 ANKRD52 LRP1-AS HSD17B6 GPR182 MIR6758 KIF5A MBD6 MARS PRIM1 DTX3 TAC3 DDIT3 RNF41 ARHGAP9 STAC3 STAT2 RBMS2
nsv519293 Chr.12:57189889 - 57243810 on Build GRCh38 Loss SHMT2 LRP1 STAC3 NDUFA4L2 NXPH4 MIR1228
nsv952189 Chr.12:57127118 - 57245617 on Build GRCh38 Deletion SHMT2 LRP1 STAC3 NDUFA4L2 NXPH4 MIR1228 LRP1-AS
dgv96n21 Chr.12:57139199 - 57243810 on Build GRCh38 Loss SHMT2 LRP1 STAC3 NDUFA4L2 NXPH4 MIR1228 LRP1-AS

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