Genomic Map
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Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SCAF1 | NM_021228.2 | 7 | 844 | NP_067051.2 |
| XM_005259122.4 | 7 | 1127 | XP_005259179.1 | |
| XM_011527194.2 | 7 | 769 | XP_011525496.1 | |
| XM_017027083.1 | 4 | 571 | XP_016882572.1 | |
| AK024444.1 | 7 | 844 | ||
| BC011662.2 | AAH11662.2 | |||
| BC053992.1 | 6 | 731 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss |
 MIR5088
ADM5
NOSIP
BCL2L12
SCAF1
PRRG2
IRF3
CPT1C
RRAS
PRR12
PRMT1
|
| nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss |
MIR5088
ADM5
NOSIP
BCL2L12
SCAF1
PRRG2
IRF3
CPT1C
RRAS
PRR12
PRMT1
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
MIR4324
SNAR-A11
ZNF473
LOC100287477
TBC1D17
CPT1C
RPS11
DBP
RASIP1
SLC6A16
DKKL1
SNAR-A8
CGB5
MIR4749
NTF4
KCNA7
RCN3
SNAR-C1
SPACA4
MIR150
RUVBL2
FTL
SNAR-A10
MIR5088
CCDC155
PLEKHA4
FAM83E
MIR6799
SNAR-A13
BSPH1
SNAR-A6
SYNGR4
PIH1D1
MIR4751
LMTK3
NTN5
SNAR-A3
CD37
KDELR1
SNAR-A12
SNORD34
SNRNP70
ALDH16A1
LOC101059948
SNAR-C5
CABP5
CARD8
PRR12
FLT3LG
ZNF114
GYS1
AP2A1
SNAR-A4
TSKS
EMP3
MAMSTR
HSD17B14
SNAR-A5
SNAR-C4
TEAD2
AKT1S1
SLC17A7
SNAR-D
NUCB1-AS1
SNAR-A2
FGF21
MIR6800
SNAR-A1
PLA2G4C
LOC105372430
GRWD1
CCDC114
PPP1R15A
BCL2L12
LIN7B
PRRG2
SNAR-A7
C19orf68
PTOV1-AS1
CGB2
SNAR-G1
SNAR-A9
ATF5
RPL18
VRK3
FUZ
PTOV1-AS2
CA11
SPHK2
PLA2G4C-AS1
CARD8-AS1
FCGRT
TRPM4
PTOV1
SNORD35B
SNAR-G2
ELSPBP1
PPFIA3
CGB8
SNORD35A
NUCB1
SCAF1
SNAR-B2
MIR6798
SULT2B1
PNKP
CGB3
MED25
KCNJ14
SNAR-A14
FUT1
BAX
NOSIP
LIG1
C19orf73
DHDH
SNAR-B1
PRMT1
GFY
CYTH2
FUT2
TMEM143
CGB1
SIGLEC16
PTH2
SEC1P
RRAS
FLJ26850
CGB7
RPL13A
HRC
LOC105447645
IRF3
LHB
MIR4750
GRIN2D
BCAT2
NUP62
TULP2
IL4I1
LOC101928295
ADM5
SNAR-C2
SIGLEC11
IZUMO1
SNORD33
SNAR-C3
SNORD32A
|
| nsv817854 | Chr.19:49618821 - 49726387 on Build GRCh38 | Gain |
MIR5088
ADM5
BCL2L12
SCAF1
IRF3
CPT1C
RRAS
PRR12
PRMT1
|
| nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss |
SCAF1
IRF3
|
| nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion |
ATF5
NOSIP
FUZ
TBC1D17
CPT1C
PTOV1-AS2
PRR12
PRMT1
AP2A1
MIR4749
TSKS
PTOV1
RRAS
AKT1S1
MIR5088
SCAF1
IRF3
MIR6799
MIR4750
NUP62
IL4I1
MIR6800
PNKP
MIR4751
ADM5
BCL2L12
MED25
PRRG2
PTOV1-AS1
|
| nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain |
MIR5088
ADM5
NOSIP
BCL2L12
SCAF1
PRRG2
IRF3
CPT1C
RRAS
PRR12
PRMT1
|
| nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion |
NOSIP
FUZ
CPT1C
RPS11
PRR12
PRMT1
AP2A1
FCGRT
TSKS
SNORD35B
RRAS
RCN3
RPL13A
MIR150
MIR5088
SNORD35A
SCAF1
IRF3
MIR6799
MIR6800
ADM5
BCL2L12
MED25
PRRG2
PTOV1-AS1
SNORD33
SNORD32A
SNORD34
|
| nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss |
NOSIP
BCL2L12
SCAF1
PRRG2
IRF3
RRAS
PRR12
PRMT1
|
| nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss |
SCAF1
IRF3
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Molecular Function -
RNA metabolism protein
RNA processing factor
RNA splicing factor
nucleic acid metabolism protein
Gene Ontology Categories:
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