Hs00715871_cn

• Gene Symbol: C9orf139
• Assay Reference Genome Location: Chr.9:137030419 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 401563
• Gene Name: chromosome 9 open reading frame 139
• Gene Aliases: -
• Location: Chr.9:137027464-137037770 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf139	NM_207511.2			NP_997394.1
	AK124899.1			BAC85986.1

Target Gene Details

• Entrez Gene ID: 2529
• Gene Name: fucosyltransferase 7
• Gene Aliases: FucT-VII
• Location: Chr.9:137030174-137032840 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FUT7	NM_004479.3	2	2169	NP_004470.1
	BC086312.1	2	2169	AAH86312.1
	X78031.1	2	1442	CAA54962.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	C9orf142 MIR3621 MAN1B1-AS1 C9orf139 FUT7 PRR31 UAP1L1 ENTPD2 LRRC26 GRIN1 LOC101930307 NPDC1 SAPCD2 DPP7 PTGDS ABCA2 TMEM210 LCNL1 CLIC3 MAN1B1
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	CCDC183 FBXW5 ANAPC2 FAM166A CYSRT1 C9orf139 FUT7 ENTPD2 MIR4479 NPDC1 RABL6 PNPLA7 PHPT1 NELFB TRAF2 LCNL1 TUBB4B ENTPD8 MAN1B1-AS1 NRARP PRR31 SAPCD2 CLIC3 C9orf142 SSNA1 C8G STPG3 LRRC26 LOC101930307 TOR4A NOXA1 RNF224 NDOR1 PTGDS ABCA2 TMEM210 MAN1B1 MIR4292 EXD3 CCDC183-AS1 TMEM203 MIR3621 SLC34A3 UAP1L1 EDF1 NSMF GRIN1 TPRN LCN12 DPP7 MIR7114 C9orf172 MAMDC4 C9orf173-AS1 RNF208
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	C9orf142 C8G MAN1B1-AS1 C9orf139 FUT7 PRR31 UAP1L1 ENTPD2 LOC101930307 NPDC1 SAPCD2 LCN12 DPP7 PTGDS ABCA2 LCNL1 CLIC3 MAN1B1
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	CCDC183 FBXW5 LCN10 SNORA17B MIR126 C9orf139 FUT7 MIR4674 LOC100128593 ENTPD2 MIR4479 NPDC1 RABL6 TMEM141 PHPT1 FAM69B TRAF2 LCNL1 CARD9 MAN1B1-AS1 PRR31 SNHG7 MIR6722 DNLZ SAPCD2 LCN6 CLIC3 SNAPC4 INPP5E C9orf142 LCN8 C8G SEC16A SNORA17A LCN15 EGFL7 LRRC26 LOC101930307 C9orf163 AGPAT2 PTGDS ABCA2 TMEM210 PMPCA LINC01451 MAN1B1 MIR4292 CCDC183-AS1 MIR4673 MIR3621 NOTCH1 UAP1L1 EDF1 GRIN1 SDCCAG3 LCN12 DPP7 C9orf172 MAMDC4 HSPC324 NALT1
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	ANAPC2 SSNA1 MIR3621 MAN1B1-AS1 C9orf139 FUT7 UAP1L1 ENTPD2 LRRC26 GRIN1 LOC101930307 NPDC1 SAPCD2 DPP7 TMEM210 MAN1B1
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	NPDC1 C9orf139 FUT7 ABCA2 ENTPD2
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	CCDC183 FBXW5 LCN10 ANAPC2 SNORA17B FAM166A CYSRT1 MIR126 C9orf139 FUT7 LOC100128593 ENTPD2 MIR4479 NPDC1 RABL6 TMEM141 PHPT1 FAM69B NELFB TRAF2 LCNL1 TUBB4B MAN1B1-AS1 NRARP PRR31 SNHG7 MIR6722 SAPCD2 LCN6 CLIC3 C9orf142 LCN8 SSNA1 C8G STPG3 SNORA17A LCN15 EGFL7 LRRC26 LOC101930307 TOR4A RNF224 NDOR1 AGPAT2 PTGDS ABCA2 TMEM210 LINC01451 MAN1B1 MIR4292 EXD3 CCDC183-AS1 TMEM203 MIR3621 SLC34A3 UAP1L1 EDF1 GRIN1 TPRN LCN12 DPP7 C9orf172 MAMDC4 HSPC324 C9orf173-AS1 RNF208

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)

CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
leukocyte migration involved in immune response
protein glycosylation
protein N-linked glycosylation
fucosylation
L-fucose catabolic process

Function(s)

fucosyltransferase activity
alpha-(1->3)-fucosyltransferase activity