Hs00734113_cn

• Gene Symbol: CNOT3
• Assay Reference Genome Location: Chr.19:54143461 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 4849
• Gene Name: CCR4-NOT transcription complex subunit 3
• Gene Aliases: LENG2, NOT3, NOT3H
• Location: Chr.19:54137689-54155708 on Build GRCh38
• Assay Gene Location: Overlaps Intron 3 - Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CNOT3	NM_014516.3			NP_055331.1
	XM_005278279.1			XP_005278336.1
	XM_005278280.2			XP_005278337.1
	XM_005278281.1			XP_005278338.1
	XM_005278282.2			XP_005278339.1
	XM_011526992.1			XP_011525294.1
	XM_011526993.2			XP_011525295.1
	AB014591.1
	AF180474.1			AAF29828.1
	AK160386.1			BAD18729.1
	AK300434.1
	BC016474.1			AAH16474.1
	BQ439042.1
	DB076207.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3644782	Chr.19:54138064 - 54154026 on Build GRCh38	Gain	CNOT3
nsv515623	Chr.19:54102901 - 54179150 on Build GRCh38	Loss	TMC4 CNOT3 PRPF31 LENG1 TFPT MBOAT7 NDUFA3
nsv953613	Chr.19:54097214 - 54198733 on Build GRCh38	Deletion	TMC4 OSCAR CNOT3 TSEN34 PRPF31 LENG1 TFPT MBOAT7 NDUFA3
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	TMC4 CNOT3 TARM1 MIR526A2 MIR523 CACNG7 LENG1 CACNG6 MIR527 MYADM MBOAT7 FAM90A27P MIR4752 ZNF813 LILRA5 ZNF677 MIR1323 MIR520G ZNF665 LILRB2 MIR519C MIR498 MIR512-1 MIR373 MIR518F MIR518A2 ZNF765 PRKCG NDUFA3 LOC105372457 VN1R2 MIR522 MIR518B MIR518E NLRP12 LILRB3 MIR519E MIR518D TSEN34 LILRB5 PRPF31 MIR521-1 MIR1283-1 MIR371A MIR519A2 BIRC8 MIR526B MIR515-1 MIR517B MIR518C DPRX MIR520E MIR515-2 MIR512-2 LOC284379 MIR372 MIR520H MIR519A1 MIR520F MIR518A1 MIR520B MIR1283-2 ZNF818P MIR519D ZNF331 TFPT VSTM1 MIR520A ZNF525 MIR520C MIR516A2 MIR519B ZNF761 MIR526A1 MIR935 MIR520D MIR517A ZNF845 MIR524 OSCAR CACNG8 MIR371B MIR516B1 MIR516A1 MIR521-2 MIR516B2 MIR517C TPM3P9 LILRA6 VN1R4 MIR525 RPS9

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

general transcription factor

Gene Ontology Categories:

Process(es)

nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
nuclear-transcribed mRNA poly(A) tail shortening
trophectodermal cell differentiation
transcription, DNA-templated
regulation of transcription, DNA-templated
DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
negative regulation of translation
gene silencing by RNA
regulation of stem cell population maintenance

Function(s)

protein binding