Hs00746391_cn

• Gene Symbol: SPATC1
• Assay Reference Genome Location: Chr.8:144046779 on build GRCh38
• Cytoband: 8q24.3

Target Gene Details

• Entrez Gene ID: 375686
• Gene Name: spermatogenesis and centriole associated 1
• Gene Aliases: SPATA15
• Location: Chr.8:144010992-144047114 on Build GRCh38
• Assay Gene Location: Within Exon 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SPATC1	NM_001134374.1	4	1561	NP_001127846.1
	NM_198572.2	5	1701	NP_940974.2
	XM_011517021.1	6	1806	XP_011515323.1
	XM_011517022.2	6	2092	XP_011515324.1
	XM_011517023.2	6	3110	XP_011515325.1
	XM_011517024.2	7	2331	XP_011515326.1
	XM_011517025.2	6	2766	XP_011515327.1
	XM_017013399.1	7	1625	XP_016868888.1
	AB092352.1	5	1689	BAD08232.1
	AK301710.1	4	1549
	BC050390.1	5	1691	AAH50390.1
	BC053547.1	5	1676	AAH53547.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv824801	Chr.8:144046683 - 144059698 on Build GRCh38	Gain	SMPD5 MIR6846 OPLAH SPATC1
nsv470249	Chr.8:143889098 - 144519234 on Build GRCh38	Loss	PLEC SCX CYC1 MIR939 RECQL4 SHARPIN SLC52A2 LOC101928953 VPS28 FOXH1 GPAA1 CYHR1 FBXL6 MROH1 KIFC2 MIR6846 PARP10 HGH1 BOP1 CPSF1 LRRC14 MIR6848 MFSD3 MIR6847 SLC39A4 PPP1R16A EXOSC4 ADCK5 TMEM249 OPLAH MIR6849 LOC101928902 GRINA DGAT1 MIR661 MAF1 SMPD5 HSF1 GPT MIR6893 MIR7112 MIR1234 TONSL-AS1 SPATC1 WDR97 SCRT1 TONSL
nsv6446	Chr.8:144012529 - 144050050 on Build GRCh38	Insertion	SMPD5 SPATC1
nsv612914	Chr.8:143972494 - 144120626 on Build GRCh38	Loss	PLEC MIR6847 EXOSC4 CYC1 SHARPIN OPLAH GRINA GPAA1 MAF1 SMPD5 MIR6846 PARP10 SPATC1 WDR97
nsv950015	Chr.8:143866633 - 144125597 on Build GRCh38	Deletion	PLEC MIR6847 EXOSC4 CYC1 SHARPIN OPLAH GRINA GPAA1 MIR661 MAF1 SMPD5 MIR6846 PARP10 EPPK1 SPATC1 WDR97
nsv1161815	Chr.8:143775169 - 144080674 on Build GRCh38	Deletion	PLEC PUF60 LOC642574 SCRIB MIR6847 EXOSC4 OPLAH GRINA MIR661 SMPD5 MIR6846 PARP10 NRBP2 MIR6845 MIR937 EPPK1 SPATC1
nsv612916	Chr.8:144044224 - 144056712 on Build GRCh38	Loss	SMPD5 OPLAH SPATC1
nsv612915	Chr.8:144007080 - 144224185 on Build GRCh38	Loss	MIR6847 EXOSC4 CYC1 SHARPIN OPLAH GPAA1 MAF1 MROH1 SMPD5 MIR6846 HGH1 SPATC1 WDR97
nsv612917	Chr.8:144045204 - 144063598 on Build GRCh38	Loss	SMPD5 MIR6846 OPLAH SPATC1
nsv515809	Chr.8:143904439 - 144519234 on Build GRCh38	Gain+Loss	PLEC SCX CYC1 MIR939 RECQL4 SHARPIN SLC52A2 LOC101928953 VPS28 FOXH1 GPAA1 CYHR1 FBXL6 MROH1 KIFC2 MIR6846 PARP10 HGH1 BOP1 CPSF1 LRRC14 MIR6848 MFSD3 MIR6847 SLC39A4 PPP1R16A EXOSC4 ADCK5 TMEM249 OPLAH MIR6849 LOC101928902 GRINA DGAT1 MIR661 MAF1 SMPD5 HSF1 GPT MIR6893 MIR7112 MIR1234 TONSL-AS1 SPATC1 WDR97 SCRT1 TONSL
dgv12431n54	Chr.8:143845100 - 144161320 on Build GRCh38	Loss	PLEC MIR6847 EXOSC4 CYC1 SHARPIN OPLAH GRINA GPAA1 MIR661 MAF1 MROH1 SMPD5 MIR6846 PARP10 HGH1 EPPK1 SPATC1 WDR97
nsv428208	Chr.8:144041826 - 144722291 on Build GRCh38	Gain	SCX CYC1 MIR939 RECQL4 SHARPIN SLC52A2 LOC101928953 VPS28 FOXH1 GPAA1 CYHR1 FBXL6 MROH1 KIFC2 MIR6846 HGH1 BOP1 ZNF251 CPSF1 LRRC14 MIR6848 MFSD3 ARHGAP39 MIR6847 SLC39A4 PPP1R16A EXOSC4 ADCK5 TMEM249 OPLAH MIR6849 LOC101928902 DGAT1 MAF1 SMPD5 C8orf82 HSF1 GPT MIR6893 MIR7112 MIR1234 TONSL-AS1 SPATC1 WDR97 SCRT1 TONSL LRRC24
nsv470250	Chr.8:143917934 - 144097007 on Build GRCh38	Gain	GPAA1 PLEC MIR661 SMPD5 MIR6847 MIR6846 PARP10 EXOSC4 CYC1 OPLAH SPATC1 GRINA
dgv12433n54	Chr.8:143902404 - 144120626 on Build GRCh38	Gain	PLEC MIR6847 EXOSC4 CYC1 SHARPIN OPLAH GRINA GPAA1 MIR661 MAF1 SMPD5 MIR6846 PARP10 SPATC1 WDR97
nsv612906	Chr.8:143917935 - 144090784 on Build GRCh38	Loss	GPAA1 PLEC MIR661 SMPD5 MIR6847 MIR6846 PARP10 EXOSC4 OPLAH SPATC1 GRINA

More Information

• Set Membership: Intragenic, Exonic, DGV Variation