Hs00832695_cn

• Gene Symbol: RBM39
• Assay Reference Genome Location: Chr.20:35709283 on build GRCh38
• Cytoband: 20q11.22

Target Gene Details

• Entrez Gene ID: 9584
• Gene Name: RNA binding motif protein 39
• Gene Aliases: CAPER, CAPERalpha, FSAP59, HCC1, RNPC2
• Location: Chr.20:35703609-35742336 on Build GRCh38
• Assay Gene Location: Overlaps Intron 13 - Exon 14

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
RBM39	NM_001242599.1			NP_001229528.1
	NM_001242600.1			NP_001229529.1
	NM_001323422.1			NP_001310351.1
	NM_001323423.1			NP_001310352.1
	NM_001323424.1			NP_001310353.1
	NM_004902.3			NP_004893.1
	NM_184234.2			NP_909122.1
	NR_040722.1
	NR_040723.1
	NR_040724.1
	XM_006723890.3			XP_006723953.1
	XM_006723891.3			XP_006723954.1
	XM_011529111.2			XP_011527413.1
	XM_017028138.1			XP_016883627.1
	XM_017028139.1			XP_016883628.1
	XM_017028140.1			XP_016883629.1
	XM_017028141.1			XP_016883630.1
	XM_017028142.1			XP_016883631.1
	XM_017028143.1			XP_016883632.1
	XM_017028144.1			XP_016883633.1
	XM_017028145.1			XP_016883634.1
	XM_017028146.1			XP_016883635.1
	XM_017028147.1			XP_016883636.1
	AK126158.1
	AK297520.1
	AK299165.1
	AK299678.1
	AK303910.1
	AL833168.1
	BC131543.1
	BC141835.1
	BC158172.1
	BX537770.1			CAD97833.1
	BX640714.1			CAE45833.1
	BX640812.1			CAE45890.1
	CR749443.1			CAH18281.2
	L10910.1			AAA16346.1
	L10911.1			AAA16347.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv526188	Chr.20:35576541 - 36019079 on Build GRCh38	Gain	ROMO1 NFS1 SCAND1 FER1L4 SPAG4 RBM39 PHF20 RBM12 CPNE1 CNBD2

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

RNA splicing factor

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription, DNA-templated
RNA processing
mRNA processing
RNA splicing

Function(s)

nucleotide binding
protein binding
poly(A) RNA binding