Hs00838496_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140848342 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_014005.4	1	571	NP_054724.1
	NM_031857.1	1	571	NP_114063.1
	AB002343.1	1	571
	AJ007610.1	1	880	CAC22257.1
	AK314303.1
	BC104802.1			AAI04803.1
	BC104804.1			AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv437955	Chr.5:140848387 - 140850586 on Build GRCh38	Loss	PCDHA2 PCDHA6 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
nsv964953	Chr.5:140848155 - 140850849 on Build GRCh38	Duplication	PCDHA2 PCDHA6 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
nsv599839	Chr.5:140837299 - 140848579 on Build GRCh38	Gain	PCDHA2 PCDHA6 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA2 PCDHA6 PCDHA10 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
dgv1651e212	Chr.5:140838196 - 140852242 on Build GRCh38	Loss	PCDHA2 PCDHA6 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA2 PCDHA6 PCDHA10 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA2 PCDHA6 PCDHA10 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHGA11 PCDHB5 PCDHGB2 PCDHGA2 PCDHB6 PCDHGB4 PCDHB9 PCDHGA5 PCDHA12 PCDHA9 PCDHA2 PCDHB2 PCDHB3 PCDHB10 PCDHGA9 PCDHGB3 PCDHA11 PCDHGA8 PCDHAC1 PCDHGB7 PCDHAC2 PCDHA10 PCDHGA3 PCDHGB5 PCDHGB6 PCDHB17P PCDHB11 PCDHB18P PCDHGB8P PCDHA8 PCDHA7 PCDHB8 TAF7 PCDHA4 PCDHGB1 PCDHB7 PCDHB13 PCDHGA1 PCDHA6 PCDHB14 PCDHGA12 PCDHGA4 LOC101926905 PCDHB12 PCDHB1 PCDHA5 PCDHA3 PCDHB15 PCDHB19P PCDHGA7 PCDHGA10 PCDHA1 PCDHB4 PCDHGA6 SLC25A2 PCDHB16 PCDHA13
dgv1652e212	Chr.5:140839141 - 140864158 on Build GRCh38	Loss	PCDHA2 PCDHA6 PCDHA10 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA2 PCDHA6 PCDHA10 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA11 PCDHA7 PCDHA9
nsv1133616	Chr.5:140842215 - 140848715 on Build GRCh38	Deletion	PCDHA2 PCDHA6 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA2 PCDHA6 PCDHA10 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
esv2421858	Chr.5:140844251 - 140857963 on Build GRCh38	Deletion	PCDHA2 PCDHA6 PCDHA10 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA2 PCDHA6 PCDHA10 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA2 PCDHA6 PCDHA10 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
dgv10096n54	Chr.5:140847633 - 140852761 on Build GRCh38	Loss	PCDHA2 PCDHA6 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
esv26168	Chr.5:140842564 - 140859300 on Build GRCh38	Gain	PCDHA2 PCDHA6 PCDHA10 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA2 PCDHA6 PCDHA10 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA2 PCDHA6 PCDHA10 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
nsv1024237	Chr.5:140810775 - 140852242 on Build GRCh38	Loss	PCDHA2 PCDHA6 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA2 PCDHA6 PCDHA10 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	PCDHA2 HARS2 PCDHA6 VTRNA1-2 PCDHA5 PCDHA3 ZMAT2 VTRNA1-1 PCDHA8 PCDHA11 PCDHA7 PCDHA10 PCDHA1 PCDHA4 HARS VTRNA1-3 PCDHA9
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA2 PCDHA6 PCDHA10 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
esv2861013	Chr.5:140834461 - 140848573 on Build GRCh38	Duplication	PCDHA2 PCDHA6 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
esv3890744	Chr.5:140846323 - 140857963 on Build GRCh38	Loss	PCDHA2 PCDHA6 PCDHA10 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
dgv10092n54	Chr.5:140835344 - 140850785 on Build GRCh38	Loss	PCDHA2 PCDHA6 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA2 PCDHA6 PCDHA10 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9
dgv1044e199	Chr.5:140843360 - 140849907 on Build GRCh38	Deletion	PCDHA2 PCDHA6 PCDHA1 PCDHA4 PCDHA5 PCDHA3 PCDHA8 PCDHA7 PCDHA9

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding