Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	56147
Gene Name:	protocadherin alpha 1
Gene Aliases:	PCDH-ALPHA1
Location:	Chr.5:140786136-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Protein ID
PCDHA1	NM_018900.3	NP_061723.1
	NM_031411.2	NP_113599.1
	AF152305.1	AAD43699.1
	AF169695.1	AAF89692.1

Target Gene Details

Entrez Gene ID:	56139
Gene Name:	protocadherin alpha 10
Gene Aliases:	CNR8, CNRN8, CNRS8, CRNR8, PCDH-ALPHA10
Location:	Chr.5:140855883-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Protein ID
PCDHA10	NM_018901.3	NP_061724.1
	NM_031860.2	NP_114066.1
	AF152306.1	AAD43700.1
	AF169689.1	AAF89329.1
	BC130447.1

Target Gene Details

Entrez Gene ID:	56138
Gene Name:	protocadherin alpha 11
Gene Aliases:	CNR7, CNRN7, CNRS7, CRNR7, PCDH-ALPHA11
Location:	Chr.5:140867513-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Protein ID
PCDHA11	NM_018902.4	NP_061725.1
	AF152307.1	AAD43701.1
	AJ007609.1	CAC22256.1

Target Gene Details

Entrez Gene ID:	56137
Gene Name:	protocadherin alpha 12
Gene Aliases:	PCDH-ALPHA12
Location:	Chr.5:140875302-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Protein ID
PCDHA12	NM_018903.3	NP_061726.1
	AF152308.1	AAD43702.1
	AK075556.1

Target Gene Details

Entrez Gene ID:	56136
Gene Name:	protocadherin alpha 13
Gene Aliases:	CNR5, CNRN5, CNRS5, CRNR5, PCDH-ALPHA13
Location:	Chr.5:140882269-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Protein ID
PCDHA13	NM_018904.2	NP_061727.1
	AB208924.1	BAD92161.1
	AF152309.1	AAD43703.1

Target Gene Details

Entrez Gene ID:	56146
Gene Name:	protocadherin alpha 2
Gene Aliases:	PCDH-ALPHA2
Location:	Chr.5:140794859-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
PCDHA2	AF152310.1			AAD43704.1

Target Gene Details

Entrez Gene ID:	56145
Gene Name:	protocadherin alpha 3
Gene Aliases:	PCDH-ALPHA3
Location:	Chr.5:140801198-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
PCDHA3	AF152311.1			AAD43705.1

Target Gene Details

Entrez Gene ID:	56144
Gene Name:	protocadherin alpha 4
Gene Aliases:	CNR1, CNRN1, CRNR1, PCDH-ALPHA4
Location:	Chr.5:140807074-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Protein ID
PCDHA4	NM_018907.3	NP_061730.1
	AB208925.1	BAD92162.1
	AF152312.1	AAD43706.1

Target Gene Details

Entrez Gene ID:	56143
Gene Name:	protocadherin alpha 5
Gene Aliases:	CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
Location:	Chr.5:140821776-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Protein ID
PCDHA5	NM_018908.2	NP_061731.1
	AB208863.1	BAD92100.1
	AF152313.1	AAD43707.1
	BC033735.1	AAH33735.1

Target Gene Details

Entrez Gene ID:	56142
Gene Name:	protocadherin alpha 6
Gene Aliases:	CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
Location:	Chr.5:140827922-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Protein ID
PCDHA6	NM_018909.3	NP_061732.1
	NM_031849.2	NP_114037.1
	AB209205.1	BAD92442.1
	AF152314.1	AAD43708.1
	AF169694.1	AAF89691.1
	BC036674.2	AAH36674.1

Target Gene Details

Entrez Gene ID:	56141
Gene Name:	protocadherin alpha 7
Gene Aliases:	CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
Location:	Chr.5:140834384-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
PCDHA7	AF152315.1			AAD43709.1

Target Gene Details

Entrez Gene ID:	56140
Gene Name:	protocadherin alpha 8
Gene Aliases:	PCDH-ALPHA8
Location:	Chr.5:140841322-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
PCDHA8	AF152316.1			AAD43710.1

Target Gene Details

Entrez Gene ID:	9752
Gene Name:	protocadherin alpha 9
Gene Aliases:	PCDH-ALPHA9
Location:	Chr.5:140847772-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Protein ID
PCDHA9	NM_031857.1	NP_114063.1
	AF152317.1	AAD43711.1
	AJ007610.1	CAC22257.1
	AK314303.1
	BC104802.1	AAI04803.1
	BC104804.1	AAI04805.1

Target Gene Details

Entrez Gene ID:	56135
Gene Name:	protocadherin alpha subfamily C, 1
Gene Aliases:	PCDH-ALPHA-C1
Location:	Chr.5:140926717-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Protein ID
PCDHAC1	NM_018898.3	NP_061721.2
	AF152303.1	AAD43697.1
	AJ007608.1	CAC22255.1

Target Gene Details

Entrez Gene ID:	56134
Gene Name:	protocadherin alpha subfamily C, 2
Gene Aliases:	PCDH-ALPHA-C2
Location:	Chr.5:140966162-141012344 on Build GRCh38
Assay Gene Location:	Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHAC2	NM_018899.5	1	2518	NP_061722.1
	NM_031883.2	1	1913	NP_114089.1
	AF152304.1	1	1913	AAD43698.1
	AF152474.1	1	1913	AAD43735.1
	AK123867.1	1	2445
	BC063288.1	1	2155	AAH63288.1
	BC104776.1	1	1975	AAI04777.1
	BC105111.1	1	1975	AAI05112.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1031849	Chr.5:140953984 - 141040639 on Build GRCh38	Loss	PCDHA3 PCDHA11 PCDHA10 PCDHAC1 PCDHA9 PCDHA12 PCDHA13 PCDHAC2 PCDHA5 PCDHA1 PCDHA6 PCDHA7 PCDHA4 PCDHA8 PCDHA2
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHA3 PCDHA11 SLC25A2 PCDHA1 PCDHB12 PCDHB5 PCDHGA3 PCDHB7 PCDHGB7 PCDHA4 PCDHA8 PCDHB15 PCDHB18P PCDHB16 PCDHA2 PCDHGA10 PCDHB11 PCDHGA1 PCDHA9 PCDHGA8 PCDHA12 PCDHA13 PCDHGA11 PCDHGB4 PCDHB9 PCDHGA2 PCDHGA6 PCDHGB5 PCDHGB6 PCDHB1 PCDHB14 PCDHB10 PCDHB13 PCDHAC2 TAF7 PCDHA5 PCDHB8 PCDHGB8P PCDHA7 PCDHB2 PCDHB3 PCDHGB2 PCDHB17P PCDHA10 PCDHGA5 PCDHGA9 PCDHAC1 PCDHGB1 PCDHB4 PCDHGA4 PCDHA6 PCDHGA12 LOC101926905 PCDHB6 PCDHGA7 PCDHB19P PCDHGB3

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More Information

Set Membership:

Intragenic

Exonic

Intronic

Non-exonic

DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Function(s) Process(es)

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System Message

Genomic Map

Assay Details

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