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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2177935 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00900667_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 20
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 20 4943 NP_065815.1
AB037727.1 12 4080 BAA92544.1
AF451977.1 20 5009 AAL49758.1

Target Gene Details

Entrez Gene ID:

 84231

Gene Name:

 TNF receptor associated factor 7

Gene Aliases:

 RFWD1, RNF119

Location:

 Chr.16:2155752-2178129 on Build GRCh38

Assay Gene Location:

 Within Exon 21
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRAF7 NM_032271.2 21 3473 NP_115647.2
XM_005255627.4 21 3513 XP_005255684.1
XM_011522700.1 21 3515 XP_011521002.1
AL136921.1 20 3369 CAB66855.1
AW245178.1 1 204
AY569455.1 20 3426 AAS68363.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LOC105371184 CCDC154 NME4 TBL3 MSLN LMF1 ARHGDIG PTX4 MIR3180-5 DDX11L10 SNORA64 C16orf91 CCDC78 SPSB3 TPSAB1 RHOT2 RAB11FIP3 CACNA1H FAM173A BRICD5 SNRNP25 CCNF MIR3176 LOC100287175 BAIAP3 PKD1 CHTF18 NTHL1 WASIR2 TELO2 LOC101929280 IFT140 RNPS1 FAM234A WDR24 RGS11 TMEM8A ERVK13-1 MIR940 RHBDL1 WFIKKN1 LMF1-AS1 MRPS34 NPW CASKIN1 LUC7L ECI1 TPSB2 MIR5587 SNORA78 SNORA10 TSR3 HAGHL GNG13 PRSS29P HS3ST6 PGP MIR6767 SSTR5-AS1 RHBDF1 HBZ NME3 MIR3677 PDIA2 NPRL3 LOC105371049 PRR25 MIR3178 NHLRC4 SOX8 FLJ42627 NOXO1 PRSS27 MIR4516 FBXL16 RPUSD1 AMDHD2 RPS2 IGFALS LOC105371046 RAB26 RPL23AP5 GFER SNHG9 UNKL SNHG19 POLR3K CEMP1 EME2 NUBP2 MIR6859-4 ZNF598 RNF151 MIR1225 LOC106660606 MIR6511B1 STUB1 SYNGR3 TPSD1 HBA2 AXIN1 MIR6768 SSTR5 KCTD5 LINC00235 E4F1 LOC652276 SLC9A3R2 UBE2I PRR35 C1QTNF8 MPG ATP6V0C HBA1 CLCN7 LOC105371038 TBC1D24 CRAMP1 RPL3L TSC2 NARFL TMEM204 MLST8 WDR90 MAPK8IP3 DNASE1L2 LINC00254 PIGQ HN1L GNPTG MCRIP2 PDPK1 LOC100134368 MIR4717 MIR662 MEIOB MRPL28 LOC729652 NTN3 RAB40C MIR3177 MSRB1 TRAF7 ABCA3 FAHD1 JMJD8 LOC105371047 HBQ1 SNORD60 DECR2 TPSG1 CAPN15 HBM C16orf59 LOC105371045 ABCA17P METRN METTL26 LOC107984876 NDUFB10 LOC107987233 HAGH
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss DNASE1L2 TBL3 NPW CASKIN1 RAB26 MIR3180-5 GFER MIR4717 ECI1 SNHG19 BRICD5 ZNF598 MIR1225 TRAF7 ABCA3 LOC106660606 MIR6511B1 PGP PKD1 NTHL1 SYNGR3 SNORD60 MIR3677 E4F1 LOC105371049 SLC9A3R2 RNPS1 NOXO1 MIR4516 TSC2 MIR940 MLST8
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss DNASE1L2 CASKIN1 SNORD60 RAB26 MIR3180-5 E4F1 LOC105371049 ECI1 SNHG19 BRICD5 MIR4516 MIR1225 TRAF7 TSC2 MIR6511B1 MLST8 PGP PKD1
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss DNASE1L2 CASKIN1 SNORD60 MIR3677 RAB26 E4F1 ECI1 RNPS1 SNHG19 BRICD5 TRAF7 MIR940 LOC106660606 MLST8 PGP
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss SNHG19 CASKIN1 SNORD60 RAB26 MIR4516 MIR1225 TRAF7 MIR3180-5 TSC2 LOC105371049 MIR6511B1 PKD1
nsv827511 Chr.16:2177743 - 2178224 on Build GRCh38 Gain CASKIN1 TRAF7
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain CASKIN1 TRAF7
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss DNASE1L2 BRICD5 CASKIN1 MIR3677 TRAF7 E4F1 MIR940 LOC106660606 MLST8 PGP ECI1 RNPS1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain AMDHD2 DNASE1L2 CASKIN1 RAB26 PDPK1 MIR3180-5 MIR4717 ECI1 LOC729652 NTN3 SNHG19 CEMP1 BRICD5 CCNF MIR1225 TRAF7 ABCA3 LOC106660606 MIR6511B1 PGP PKD1 MIR6767 MIR6768 SNORD60 MIR3677 E4F1 LOC105371049 LOC652276 MIR3178 RNPS1 ATP6V0C C16orf59 ABCA17P TBC1D24 MIR4516 TSC2 MIR940 MLST8
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion DNASE1L2 CASKIN1 SNORD60 MIR3677 RAB26 E4F1 MIR4717 ECI1 RNPS1 SNHG19 BRICD5 TRAF7 ABCA3 MIR940 LOC106660606 MLST8 PGP

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