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See other SIGIRR CNV Assays ›
Gene Symbol
SIGIRR
Assay Reference Genome
Location

Chr.11:408738 on build GRCh38
Cytoband
11p15.5
Assay ID Hs00923695_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 59307

Gene Name:

 single Ig and TIR domain containing

Gene Aliases:

 IL-1R8, TIR8

Location:

 Chr.11:405716-417454 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Exon 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SIGIRR NM_001135053.1 NP_001128525.1
NM_001135054.1 NP_001128526.1
NM_021805.2 NP_068577.2
XM_005253044.2 XP_005253101.1
XM_005253045.1 XP_005253102.1
XM_005253046.1 XP_005253103.1
XM_005253048.4 XP_005253105.1
XM_017018099.1 XP_016873588.1
XM_017018100.1 XP_016873589.1
AK025099.1 BAB15066.1
AK093427.1
AK172830.1 BAD18795.1
AY358342.1 AAQ88708.1
BC003591.1 AAH03591.1
BC025953.1 AAH25953.1
BC106007.1 AAI06008.1
CR457338.1 CAG33619.1
DA963481.1
DB112269.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv527327 Chr.11:295343 - 620599 on Build GRCh38 Loss CDHR5 RASSF7 LRRC56 ANO9 LMNTD2 PGGHG MIR210 B4GALNT4 MIR210HG IRF7 IFITM5 HRAS LOC143666 PTDSS2 PHRF1 IFITM3 LOC101059906 IFITM1 SIGIRR IFITM2 RNH1 PKP3
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss SLC25A22 TOLLIP ANO9 PIDD1 SNORA52 PNPLA2 MUC5B LOC101927503 MIR210HG IRF7 PDDC1 PTDSS2 DEAF1 POLR2L CDHR5 CRACR2B RASSF7 LRRC56 AP2A2 TALDO1 MUC2 LMNTD2 RPLP2 TSPAN4 MIR210 B4GALNT4 CEND1 MUC6 LOC171391 HRAS LOC143666 SCT EPS8L2 CHID1 PHRF1 CD151 LOC101059906 PANO1 MUC5AC DRD4 SIGIRR TMEM80 RNH1 MIR6744 PKP3
nsv552776 Chr.11:366710 - 432436 on Build GRCh38 Loss ANO9 SIGIRR B4GALNT4 PKP3
nsv951268 Chr.11:368601 - 503700 on Build GRCh38 Deletion PTDSS2 ANO9 SIGIRR B4GALNT4 RNH1 PKP3
nsv552770 Chr.11:356090 - 444628 on Build GRCh38 Gain ANO9 SIGIRR B4GALNT4 PKP3
dgv1505n54 Chr.11:198510 - 470331 on Build GRCh38 Gain BET1L MIR6743 PSMD13 ANO9 PGGHG ODF3 B4GALNT4 IFITM5 RIC8A PTDSS2 IFITM3 IFITM1 SIRT3 NLRP6 SIGIRR IFITM2 PKP3
nsv1159790 Chr.11:340219 - 491334 on Build GRCh38 Deletion PTDSS2 ANO9 SIGIRR B4GALNT4 PKP3
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion SLC25A22 ANO9 PIDD1 SNORA52 PNPLA2 MIR210HG IRF7 PDDC1 PTDSS2 DEAF1 POLR2L CDHR5 CRACR2B RASSF7 LRRC56 AP2A2 TALDO1 LMNTD2 RPLP2 TSPAN4 MIR210 B4GALNT4 CEND1 LOC171391 HRAS LOC143666 SCT EPS8L2 CHID1 PHRF1 CD151 LOC101059906 PANO1 DRD4 SIGIRR TMEM80 RNH1 PKP3

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More Information


Additional Information:

For this assay, SNP(s) [rs113922210] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

transmembrane signal receptor

Gene Ontology Categories:

Function(s) Process(es)


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