Hs00976327_cn

• Gene Symbol: C9orf139
• Assay Reference Genome Location: Chr.9:137032763 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 401563
• Gene Name: chromosome 9 open reading frame 139
• Gene Aliases: -
• Location: Chr.9:137027464-137037770 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf139	NM_207511.2	2	1214	NP_997394.1
	XM_017014717.1	2	179	XP_016870206.1
	AK124899.1	2	1214	BAC85986.1
	BC132809.1
	BC136839.1

Target Gene Details

• Entrez Gene ID: 2529
• Gene Name: fucosyltransferase 7
• Gene Aliases: FucT-VII
• Location: Chr.9:137030174-137032840 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FUT7	NM_004479.3	1	78	NP_004470.1
	BC086312.1	1	78	AAH86312.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	C9orf139 MIR3621 GRIN1 PRR31 TMEM210 NPDC1 PTGDS FUT7 DPP7 CLIC3 UAP1L1 MAN1B1 LOC101930307 SAPCD2 MAN1B1-AS1 C9orf142 LCNL1 LRRC26 ENTPD2 ABCA2
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	MAMDC4 ENTPD8 NDOR1 RNF224 FUT7 SLC34A3 NOXA1 PHPT1 C9orf142 TUBB4B MIR4479 TMEM203 CCDC183-AS1 STPG3 C9orf172 MIR7114 NPDC1 PTGDS DPP7 CLIC3 UAP1L1 ANAPC2 LOC101930307 SAPCD2 MAN1B1-AS1 PNPLA7 LCNL1 LRRC26 ENTPD2 SSNA1 C8G MIR3621 NELFB CYSRT1 TOR4A CCDC183 FAM166A NSMF MAN1B1 RNF208 EXD3 TPRN FBXW5 EDF1 C9orf139 C9orf173-AS1 RABL6 GRIN1 NRARP PRR31 TMEM210 LCN12 MIR4292 TRAF2 ABCA2
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	C9orf139 PRR31 NPDC1 PTGDS FUT7 DPP7 CLIC3 UAP1L1 MAN1B1 LCN12 LOC101930307 SAPCD2 MAN1B1-AS1 C9orf142 LCNL1 ENTPD2 C8G ABCA2
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MAMDC4 SNHG7 FUT7 SNAPC4 MIR126 CARD9 LCN6 PHPT1 FAM69B C9orf142 MIR4479 MIR4673 CCDC183-AS1 EGFL7 MIR6722 INPP5E C9orf172 NPDC1 LCN10 PTGDS DPP7 CLIC3 UAP1L1 LCN8 LOC101930307 SAPCD2 MAN1B1-AS1 LCNL1 LRRC26 NOTCH1 ENTPD2 C8G MIR3621 LINC01451 TMEM141 LCN15 CCDC183 MAN1B1 MIR4674 SNORA17A SEC16A AGPAT2 FBXW5 EDF1 C9orf139 RABL6 GRIN1 NALT1 SNORA17B PRR31 TMEM210 LOC100128593 DNLZ C9orf163 PMPCA HSPC324 LCN12 SDCCAG3 MIR4292 TRAF2 ABCA2
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	C9orf139 MIR3621 GRIN1 TMEM210 NPDC1 FUT7 DPP7 UAP1L1 MAN1B1 ANAPC2 LOC101930307 SAPCD2 MAN1B1-AS1 LRRC26 ENTPD2 SSNA1
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	C9orf139 NPDC1 FUT7 ENTPD2 ABCA2
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	MAMDC4 SNHG7 NDOR1 RNF224 FUT7 MIR126 SLC34A3 LCN6 PHPT1 FAM69B C9orf142 TUBB4B MIR4479 TMEM203 CCDC183-AS1 STPG3 EGFL7 MIR6722 C9orf172 NPDC1 LCN10 PTGDS DPP7 CLIC3 UAP1L1 ANAPC2 LCN8 LOC101930307 SAPCD2 MAN1B1-AS1 LCNL1 LRRC26 ENTPD2 SSNA1 C8G MIR3621 LINC01451 NELFB CYSRT1 TMEM141 LCN15 TOR4A CCDC183 FAM166A MAN1B1 SNORA17A RNF208 EXD3 TPRN AGPAT2 FBXW5 EDF1 C9orf139 C9orf173-AS1 RABL6 GRIN1 SNORA17B NRARP PRR31 TMEM210 LOC100128593 HSPC324 LCN12 MIR4292 TRAF2 ABCA2

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)

CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
leukocyte migration involved in immune response
protein glycosylation
protein N-linked glycosylation
fucosylation
L-fucose catabolic process

Function(s)

fucosyltransferase activity
alpha-(1->3)-fucosyltransferase activity