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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2276598 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01044754_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Exon 33
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 33 5903 NP_001080.2
AB070929.1 BAB86781.1
AB210044.1 32 5729 BAE06126.1
BC140895.1 30 5228
BC146866.1 30 5228
BC151840.1 33 5885
U78735.1 33 5750 AAC50967.1
X97187.1 32 5538 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication WDR90 WFIKKN1 RHBDL1 CACNA1H STUB1 MSLN MIR3677 CCDC154 RNPS1 BAIAP3 DECR2 ERVK13-1 AXIN1 RAB40C RHOT2 TMEM8A NPRL3 PIGQ SSTR5 MRPS34 SNHG19 MIR662 LOC101929280 NUBP2 ABCA17P WDR24 NDUFB10 NTN3 E4F1 IFT140 AMDHD2 LOC105371047 HBM TPSAB1 PRSS27 LOC105371045 FAM234A CAPN15 RPL3L SPSB3 HBA1 C1QTNF8 ABCA3 LOC106660606 SOX8 HBZ KCTD5 HBQ1 MIR5587 UNKL FLJ42627 CASKIN1 GNPTG CEMP1 MIR6767 HAGH MIR940 NME3 METRN ECI1 LOC652276 RPUSD1 TBC1D24 NARFL TSC2 NPW FAHD1 CHTF18 GNG13 ARHGDIG NOXO1 MCRIP2 NHLRC4 NTHL1 RNF151 RAB26 SLC9A3R2 TPSG1 CCNF MAPK8IP3 LOC729652 LUC7L PDPK1 FBXL16 MIR3176 TELO2 LOC105371049 MPG SNORA10 DNASE1L2 HAGHL C16orf59 UBE2I MIR3178 LMF1 HS3ST6 CCDC78 PDIA2 TPSD1 SNORD60 RGS11 LINC00254 PRR35 MIR6511B1 HBA2 RAB11FIP3 PRR25 RPL23AP5 PTX4 MIR4717 SSTR5-AS1 LOC105371184 MRPL28 MIR6859-4 RHBDF1 TSR3 EME2 MIR3177 DDX11L10 LOC100287175 NME4 PGP LOC105371038 IGFALS TRAF7 MEIOB MIR4516 MIR1225 PRSS29P METTL26 MIR6768 TBL3 ATP6V0C WASIR2 SNORA78 MLST8 CLCN7 RPS2 LOC107987233 LOC105371046 BRICD5 CRAMP1 SNRNP25 SYNGR3 ZNF598 FAM173A MSRB1 PKD1 GFER LMF1-AS1 C16orf91 POLR3K SNORA64 JMJD8 LINC00235 TPSB2 SNHG9 HN1L MIR3180-5 TMEM204 LOC107984876 LOC100134368
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss ABCA3 LOC106660606 PGP TRAF7 MIR3677 RNPS1 MIR4516 MIR1225 TBL3 MLST8 LOC105371049 CASKIN1 MIR940 BRICD5 DNASE1L2 ECI1 TSC2 SNHG19 SNORD60 NPW SYNGR3 ZNF598 PKD1 GFER MIR6511B1 NOXO1 E4F1 MIR4717 NTHL1 RAB26 SLC9A3R2 MIR3180-5
nsv571201 Chr.16:2255538 - 2365929 on Build GRCh38 Loss ABCA3 LOC106660606 MIR4717 ABCA17P MIR3677 MIR940 RNPS1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain ABCA3 LOC106660606 PGP LOC729652 PDPK1 TRAF7 MIR3677 RNPS1 MIR4516 MIR1225 MIR6768 ATP6V0C MLST8 LOC105371049 CASKIN1 CEMP1 MIR6767 MIR940 BRICD5 DNASE1L2 C16orf59 MIR3178 ECI1 LOC652276 TBC1D24 TSC2 SNHG19 SNORD60 ABCA17P PKD1 MIR6511B1 NTN3 E4F1 AMDHD2 MIR4717 RAB26 CCNF MIR3180-5
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion ABCA3 LOC106660606 ECI1 PGP SNHG19 SNORD60 TRAF7 MIR3677 RNPS1 E4F1 MIR4717 MLST8 RAB26 CASKIN1 MIR940 BRICD5 DNASE1L2

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