Genomic Map
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Target Gene Details
Entrez Gene ID: | 5777 |
Gene Name: | protein tyrosine phosphatase, non-receptor type 6 |
Gene Aliases: |
HCP, HCPH, HPTP1C, PTP-1C, SH-PTP1, SHP-1, SHP-1L, SHP1 |
Location: |
Chr.12:6946576-6961316 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 1 - Intron 1 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| PTPN6 | NM_080548.4 | NP_536858.1 | ||
| XM_011520988.1 | XP_011519290.1 | |||
| AK300167.1 | ||||
| AK313379.1 | ||||
| BC002523.2 | AAH02523.1 | |||
| BC007667.2 | AAH07667.1 | |||
| BM742181.1 | ||||
| DA431502.1 | ||||
| DA868001.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv557262 | Chr.12:6943922 - 6954519 on Build GRCh38 | Gain |
 C12orf57
PTPN6
|
| dgv2324n54 | Chr.12:6945768 - 6956472 on Build GRCh38 | Loss |
C12orf57
PTPN6
|
| nsv1047373 | Chr.12:6902891 - 7055754 on Build GRCh38 | Gain |
MIR200C
RNU7-1
LPCAT3
ATN1
PTPN6
LRRC23
PHB2
ENO2
MIR141
LOC105369635
SCARNA12
C12orf57
EMG1
|
| dgv2325n54 | Chr.12:6946329 - 6960947 on Build GRCh38 | Loss |
PTPN6
|
| nsv509453 | Chr.12:6896530 - 7007852 on Build GRCh38 | Insertion |
MIR200C
RNU7-1
LPCAT3
ATN1
PTPN6
LRRC23
PHB2
ENO2
MIR141
LOC105369635
SCARNA12
C12orf57
EMG1
|
| nsv1035811 | Chr.12:6876316 - 6994911 on Build GRCh38 | Gain |
MIR200C
RNU7-1
LPCAT3
ATN1
DSTNP2
PTPN6
RPL13P5
LRRC23
PHB2
ENO2
MIR141
LOC105369635
SCARNA12
C12orf57
LOC105369632
EMG1
|
Back To TopMore Information
Set Membership: |
Intragenic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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