Hs01112952_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140856843 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56139
• Gene Name: protocadherin alpha 10
• Gene Aliases: CNR8, CNRN8, CNRS8, CRNR8, PCDH-ALPHA10
• Location: Chr.5:140855883-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA10	NM_018901.3	1	961	NP_061724.1
	NM_031859.2	1	961	NP_114065.1
	NM_031860.2	1	961	NP_114066.1
	AF152306.1	1	795	AAD43700.1
	AF152475.1	1	795	AAD43736.1
	AF169689.1	1	795	AAF89329.1
	BC130447.1	1	834

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_031857.1			NP_114063.1
	AF152317.1			AAD43711.1
	AJ007610.1			CAC22257.1
	AK314303.1
	BC104802.1			AAI04803.1
	BC104804.1			AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA9 PCDHA1 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4
esv2421858	Chr.5:140844251 - 140857963 on Build GRCh38	Deletion	PCDHA9 PCDHA1 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA9 PCDHA1 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA9 PCDHA1 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA9 PCDHA1 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA9 PCDHA1 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA9 PCDHA1 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4
esv26168	Chr.5:140842564 - 140859300 on Build GRCh38	Gain	PCDHA9 PCDHA1 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA9 PCDHA1 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA9 PCDHA1 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA9 PCDHA1 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4
dgv10105n54	Chr.5:140853365 - 140857963 on Build GRCh38	Loss	PCDHA9 PCDHA1 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4
dgv10102n54	Chr.5:140851652 - 140857963 on Build GRCh38	Loss	PCDHA9 PCDHA1 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4
nsv1135376	Chr.5:140849315 - 140859915 on Build GRCh38	Deletion	PCDHA9 PCDHA1 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4
nsv599903	Chr.5:140855278 - 140857963 on Build GRCh38	Loss	PCDHA9 PCDHA1 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHB10 PCDHGB8P PCDHGA7 PCDHB9 TAF7 PCDHGB6 PCDHGA6 PCDHGA4 PCDHA3 PCDHB7 PCDHGB3 PCDHGA3 PCDHGA2 PCDHGA10 LOC101926905 PCDHA8 PCDHB16 PCDHB3 PCDHGA9 PCDHGB2 PCDHA10 PCDHAC2 PCDHA9 PCDHA1 PCDHB13 PCDHGA5 PCDHA5 PCDHGA1 PCDHA7 PCDHB2 PCDHGA8 PCDHGB7 PCDHAC1 PCDHA4 PCDHB1 PCDHA11 PCDHB4 PCDHA13 PCDHGB4 PCDHB11 PCDHB12 PCDHB14 PCDHA12 SLC25A2 PCDHGB1 PCDHB8 PCDHGA12 PCDHB18P PCDHA2 PCDHB5 PCDHB15 PCDHGA11 PCDHGB5 PCDHB17P PCDHB19P PCDHB6 PCDHA6
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	PCDHA8 VTRNA1-1 HARS PCDHA2 PCDHA10 PCDHA4 PCDHA9 VTRNA1-3 PCDHA1 PCDHA11 PCDHA5 ZMAT2 PCDHA3 PCDHA7 PCDHA6 VTRNA1-2 HARS2
dgv1652e212	Chr.5:140839141 - 140864158 on Build GRCh38	Loss	PCDHA9 PCDHA1 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA9 PCDHA1 PCDHA11 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4
esv3890744	Chr.5:140846323 - 140857963 on Build GRCh38	Loss	PCDHA9 PCDHA1 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA9 PCDHA1 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4
nsv599894	Chr.5:140852761 - 140864165 on Build GRCh38	Loss	PCDHA9 PCDHA1 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4
dgv10099n54	Chr.5:140850785 - 140859109 on Build GRCh38	Loss	PCDHA9 PCDHA1 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4
nsv964954	Chr.5:140856140 - 140858351 on Build GRCh38	Duplication	PCDHA9 PCDHA1 PCDHA5 PCDHA8 PCDHA3 PCDHA7 PCDHA6 PCDHA2 PCDHA10 PCDHA4

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding