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See other SCAF1 CNV Assays ›
Gene Symbol
SCAF1
Assay Reference Genome
Location

Chr.19:49646622 on build GRCh38
Cytoband
19q13.33
Assay ID Hs01130376_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 58506

Gene Name:

 SR-related CTD associated factor 1

Gene Aliases:

 SRA1

Location:

 Chr.19:49640483-49658649 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 7 - Intron 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SCAF1 NM_021228.2 NP_067051.2
XM_005259122.4 XP_005259179.1
XM_011527194.2 XP_011525496.1
XM_017027083.1 XP_016882572.1
AK024444.1
BC011662.2 AAH11662.2
BC053992.1 AAH53992.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469715 Chr.19:49572544 - 49730286 on Build GRCh38 Gain+Loss ADM5 BCL2L12 IRF3 CPT1C PRMT1 RRAS NOSIP PRRG2 MIR5088 SCAF1 PRR12
nsv833865 Chr.19:49572545 - 49730286 on Build GRCh38 Gain+Loss ADM5 BCL2L12 IRF3 CPT1C PRMT1 RRAS NOSIP PRRG2 MIR5088 SCAF1 PRR12
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss PTH2 SNAR-A12 SLC6A16 RPL13A CYTH2 GYS1 AKT1S1 SNAR-A4 C19orf68 MIR4324 FUZ SNAR-C5 TRPM4 PTOV1-AS1 FLJ26850 LOC101928295 LIN7B MIR6799 DHDH FTL CGB1 SPHK2 SNORD33 RRAS SIGLEC16 TMEM143 BAX SNAR-A2 KCNJ14 SNAR-C3 SNAR-A9 SPACA4 IZUMO1 NUCB1 SNAR-A3 CGB3 LOC100287477 SEC1P NTF4 KDELR1 MED25 CGB7 MAMSTR SNAR-G2 C19orf73 FLT3LG TEAD2 CD37 PLEKHA4 PIH1D1 PTOV1-AS2 SNAR-G1 ZNF473 SNRNP70 ADM5 FAM83E SNORD35A DKKL1 SULT2B1 MIR6800 SNAR-A5 PTOV1 CPT1C SNAR-A1 GRWD1 HSD17B14 RPL18 LOC105372430 MIR5088 SYNGR4 SLC17A7 LOC105447645 PPFIA3 SNAR-A7 SNAR-A6 KCNA7 FCGRT EMP3 PLA2G4C-AS1 TULP2 NOSIP TSKS AP2A1 NUP62 GFY DBP SIGLEC11 SCAF1 SNAR-A14 MIR4750 MIR4749 LHB LIG1 SNORD34 RPS11 SNAR-B1 CGB5 FUT2 SNAR-A11 VRK3 SNAR-C4 ALDH16A1 SNAR-C2 MIR6798 SNAR-A8 CARD8 ZNF114 IL4I1 RCN3 SNORD32A ELSPBP1 SNAR-D SNAR-C1 PLA2G4C NUCB1-AS1 MIR4751 CABP5 CA11 PNKP BCAT2 MIR150 TBC1D17 RASIP1 PRRG2 CCDC114 BCL2L12 IRF3 PRMT1 SNAR-A10 FUT1 LMTK3 CARD8-AS1 PPP1R15A FGF21 LOC101059948 CCDC155 SNAR-A13 NTN5 HRC CGB8 CGB2 RUVBL2 GRIN2D ATF5 SNAR-B2 BSPH1 SNORD35B PRR12
nsv817854 Chr.19:49618821 - 49726387 on Build GRCh38 Gain ADM5 BCL2L12 IRF3 CPT1C PRMT1 RRAS MIR5088 SCAF1 PRR12
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion MED25 NOSIP TSKS AKT1S1 PTOV1-AS2 FUZ AP2A1 ADM5 NUP62 MIR4751 PTOV1-AS1 PNKP MIR6800 TBC1D17 PRRG2 SCAF1 BCL2L12 PTOV1 IRF3 CPT1C PRMT1 MIR4750 MIR4749 MIR6799 RRAS MIR5088 ATF5 IL4I1 PRR12
nsv833864 Chr.19:49551790 - 49733819 on Build GRCh38 Gain ADM5 BCL2L12 IRF3 CPT1C PRMT1 RRAS NOSIP PRRG2 MIR5088 SCAF1 PRR12
nsv1160655 Chr.19:49489110 - 49841830 on Build GRCh38 Deletion MED25 FCGRT RCN3 SNORD32A NOSIP RPL13A TSKS FUZ AP2A1 ADM5 PTOV1-AS1 SNORD35A MIR6800 MIR150 PRRG2 SCAF1 BCL2L12 IRF3 CPT1C PRMT1 MIR6799 SNORD33 RRAS MIR5088 SNORD34 RPS11 SNORD35B PRR12
nsv828578 Chr.19:49560777 - 49680548 on Build GRCh38 Loss BCL2L12 IRF3 PRMT1 RRAS NOSIP PRRG2 SCAF1 PRR12
nsv579908 Chr.19:49645135 - 49663393 on Build GRCh38 Loss IRF3 SCAF1

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