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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89738581 on build GRCh38
Cytoband
16q24.3
Assay ID Hs01137686_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Exon 44
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 43 4430 NP_000126.2
NM_001286167.1 43 4434 NP_001273096.1
XM_005256294.4 42 4608 XP_005256351.1
XM_011522945.2 41 4479 XP_011521247.1
XM_011522946.2 42 4615 XP_011521248.1
XM_011522947.2 36 4526 XP_011521249.1
XM_017023044.1 42 4302 XP_016878533.1
AK299282.1 43 4423
X99226.1 43 4419 CAA67610.1

Target Gene Details

Entrez Gene ID:

 92822

Gene Name:

 zinc finger protein 276

Gene Aliases:

 CENP-Z, CENPZ, ZADT, ZFP276, ZNF477

Location:

 Chr.16:89720368-89740925 on Build GRCh38

Assay Gene Location:

 Within Exon 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ZNF276 NM_001113525.1 11 2277 NP_001106997.1
NM_152287.3 11 2267 NP_689500.2
NR_110122.1 11 2352
NR_110126.1 11 2235
NR_110128.1 11 2158
NR_110129.1 11 2247
XM_005256324.3 XP_005256381.1
XM_005256328.3 XP_005256385.1
XM_017023890.1 10 2202 XP_016879379.1
AK026482.1
AK056405.1 11 2303
AK096004.1
AK096762.1
AK295770.1
BC032781.1 AAH32781.2
BC107603.1 11 2092 AAI07604.1
BC110348.1 AAI10349.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion ZNF276 VPS9D1-AS1 FANCA VPS9D1
nsv573744 Chr.16:89738447 - 89915950 on Build GRCh38 Loss ZNF276 TCF25 LOC105371419 FANCA LOC107984817 SPIRE2
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion ZNF276 SPATA2L CDK10 VPS9D1-AS1 FANCA VPS9D1
nsv573743 Chr.16:89664419 - 89853617 on Build GRCh38 Gain ZNF276 SPATA2L CDK10 LOC105371419 SPATA33 VPS9D1-AS1 FANCA LOC107984817 SPIRE2 VPS9D1
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss ZNF276 GAS8 DBNDD1 CDK10 LOC105371419 SPATA33 CENPBD1 VPS9D1-AS1 FANCA SPIRE2 VPS9D1 CHMP1A TCF25 SPATA2L TUBB3 GAS8-AS1 DEF8 AFG3L1P LOC107984817 DPEP1 MC1R
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss URAHP FAM157C DBNDD1 CDK10 LOC105371414 CPNE7 SPIRE2 ZNF778 VPS9D1 TCF25 SPG7 TUBB8P7 SPATA2L GAS8-AS1 DEF8 AFG3L1P LOC107984817 DPEP1 MC1R ZNF276 GAS8 SNORD68 LOC105371419 LOC100287036 SPATA33 CENPBD1 VPS9D1-AS1 FANCA LOC101927817 PRDM7 CHMP1A TUBB3 ANKRD11 RPL13
dgv875e212 Chr.16:89737043 - 89738817 on Build GRCh38 Loss ZNF276 FANCA
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss ZNF276 LOC105371419 FANCA LOC107984817 SPIRE2
nsv833330 Chr.16:89678466 - 89741783 on Build GRCh38 Loss ZNF276 SPATA2L CDK10 VPS9D1-AS1 FANCA VPS9D1
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss SLC22A31 CYBA DBNDD1 LOC105371414 SPIRE2 ZNF778 TCF25 SPATA2L GAS8-AS1 ACSF3 DEF8 AFG3L1P CBFA2T3 DPEP1 MC1R SNORD68 LOC100287036 SPATA33 CENPBD1 PIEZO1 LOC400558 LOC100289580 PRDM7 CDT1 CHMP1A LOC107987238 TRAPPC2L PABPN1L URAHP FAM157C CDK10 CPNE7 LOC100129697 APRT LOC105371409 VPS9D1 LOC101927793 SPG7 GALNS LOC339059 TUBB8P7 CTU2 LOC107984817 ZNF276 SNAI3 MVD GAS8 LOC105371419 CDH15 VPS9D1-AS1 FANCA LOC101927817 RNF166 TUBB3 LINC00304 SNAI3-AS1 IL17C ANKRD11 RPL13 MIR4722
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion ZNF276 SNORD68 CDK10 SPATA33 VPS9D1-AS1 FANCA CPNE7 VPS9D1 CHMP1A SPG7 SPATA2L RPL13 DPEP1

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