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See other LIG1 CNV Assays ›
Gene Symbol
LIG1
Assay Reference Genome
Location

Chr.19:48135728 on build GRCh38
Cytoband
19q13.33
Assay ID Hs01171383_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 3978

Gene Name:

 DNA ligase 1

Gene Aliases:

 -

Location:

 Chr.19:48115445-48170603 on Build GRCh38

Assay Gene Location:

 Within Exon 17
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LIG1 NM_000234.2 16 1895 NP_000225.1
NM_001289063.1 15 1802 NP_001275992.1
NM_001289064.1 14 1691 NP_001275993.1
NM_001320970.1 16 1892 NP_001307899.1
NM_001320971.1 15 1805 NP_001307900.1
NR_110296.1 16 1892
NR_135497.1 16 1895
NR_135498.1 15 1810
NR_135499.1 15 1805
NR_135500.1 16 2072
NR_135501.1 15 1802
XM_017026809.1 14 1424 XP_016882298.1
AB208791.1 16 1615 BAD92028.1
AK225863.1
AK297296.1 14 1402
AK300370.1 15 1543
AK300607.1 11 1231
AK314210.1 16 1602
BC108318.1 16 1895 AAI08319.1
BC110622.2 15 1544 AAI10623.1
M36067.1 16 1595 AAA59518.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833853 Chr.19:47982539 - 48184317 on Build GRCh38 Loss CABP5 LIG1 C19orf68 PLA2G4C PLA2G4C-AS1 BSPH1 ELSPBP1
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss FLJ26850 KCNJ14 MIR6799 SNAR-A4 RUVBL2 SCAF1 FTL SNORD34 NUCB1 CARD8-AS1 MAMSTR SPHK2 LOC101059948 MIR6800 VRK3 MIR4749 GRIN2D SNAR-A14 MIR150 PIH1D1 SNAR-G1 CARD8 IL4I1 SNAR-B2 PLEKHA4 PTOV1-AS2 LMTK3 MIR4751 SLC6A16 NUP62 RPL18 AP2A1 RPL13A NTF4 SNAR-A2 SNAR-A1 LIN7B GFY SNAR-D TEAD2 PRMT1 ZNF473 SNORD35B SNAR-A11 SNAR-C3 HRC EMP3 ATF5 ZNF114 BCL2L12 PTOV1-AS1 SNAR-A9 CABP5 PRRG2 SNAR-A5 MIR5088 GRWD1 FUT1 PLA2G4C-AS1 SULT2B1 TULP2 LOC101928295 CGB1 RPS11 SLC17A7 DKKL1 RASIP1 FUT2 TMEM143 FUZ SNAR-A10 SYNGR4 SNAR-A12 ADM5 SNAR-C5 CD37 RCN3 SNAR-C2 CGB3 KDELR1 BSPH1 MIR4324 CGB7 CGB8 LOC100287477 NOSIP MIR6798 SNAR-C4 RRAS SIGLEC16 FGF21 NUCB1-AS1 PPP1R15A FLT3LG PTOV1 PNKP CPT1C IZUMO1 BCAT2 HSD17B14 CA11 KCNA7 SNORD32A MIR4750 SNAR-A8 C19orf68 CYTH2 SNAR-A6 SNAR-A7 TBC1D17 SEC1P SNAR-B1 SNAR-C1 ALDH16A1 FCGRT SNAR-A3 CCDC155 SNRNP70 TRPM4 SNORD33 PLA2G4C ELSPBP1 GYS1 SNAR-A13 LHB IRF3 CGB2 TSKS LIG1 LOC105372430 NTN5 SPACA4 CCDC114 PPFIA3 PRR12 PTH2 BAX LOC105447645 SNAR-G2 SNORD35A DBP MED25 DHDH AKT1S1 C19orf73 FAM83E SIGLEC11 CGB5
esv34181 Chr.19:48009377 - 48416682 on Build GRCh38 Loss CARD8 KDELR1 LIG1 EMP3 CARD8-AS1 CCDC114 ZNF114 TMEM143 CABP5 GRIN2D SYNGR4 C19orf68 PLA2G4C PLA2G4C-AS1 ELSPBP1

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