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See other ATP2A1 CNV Assays ›
Gene Symbol
ATP2A1
Assay Reference Genome
Location

Chr.16:28882472 on build GRCh38
Cytoband
16p11.2
Assay ID Hs01198852_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 487

Gene Name:

 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1

Gene Aliases:

 ATP2A, SERCA1

Location:

 Chr.16:28878488-28904509 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 5 - Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ATP2A1 NM_001286075.1 NP_001273004.1
NM_004320.4 NP_004311.1
NM_173201.3 NP_775293.1
AK128456.1
AK291314.1
AL706356.1
BC037354.1 AAH37354.1
BX537389.1 CAD97631.1
BX537784.1 CAD97841.1
BX647365.1
BX647366.1
BX647367.1
BX648544.1
BX649072.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4987n54 Chr.16:28824884 - 29032129 on Build GRCh38 Gain ATXN2L NFATC2IP SH2B1 CD19 LAT SPNS1 RABEP2 MIR4517 MIR4721 ATP2A1-AS1 TUFM ATP2A1
esv3892826 Chr.16:28814728 - 29032129 on Build GRCh38 Gain+Loss ATXN2L NFATC2IP SH2B1 CD19 LAT SPNS1 RABEP2 MIR4517 MIR4721 ATP2A1-AS1 TUFM ATP2A1
esv3638349 Chr.16:28860611 - 28907894 on Build GRCh38 Gain SH2B1 RABEP2 ATP2A1-AS1 ATP2A1
esv2758640 Chr.16:28163817 - 29139232 on Build GRCh38 Gain+Loss APOBR MIR4517 NPIPB8 LOC101928215 ATP2A1 ATXN2L EIF3CL SH2B1 NPIPB9 CLN3 SPNS1 SGF29 IL27 ATP2A1-AS1 MIR6862-2 SULT1A2 CD19 LAT RABEP2 NUPR1 MIR4721 TUFM NFATC2IP EIF3C SBK1 XPO6 SULT1A1 NPIPB6 NPIP RRN3P2 MIR6862-1
nsv518648 Chr.16:28826194 - 29032129 on Build GRCh38 Loss ATXN2L NFATC2IP SH2B1 CD19 LAT SPNS1 RABEP2 MIR4517 MIR4721 ATP2A1-AS1 TUFM ATP2A1
nsv1059555 Chr.16:28373144 - 29195838 on Build GRCh38 Gain APOBR MIR4517 NPIPB8 LOC101928215 ATP2A1 ATXN2L EIF3CL SH2B1 NPIPB9 CLN3 SPNS1 SGF29 IL27 ATP2A1-AS1 MIR6862-2 SULT1A2 LOC107984832 CD19 LAT RABEP2 NUPR1 MIR4721 TUFM NFATC2IP EIF3C SULT1A1 NPIP RRN3P2 MIR6862-1
dgv2831n100 Chr.16:28812594 - 29032542 on Build GRCh38 Gain ATXN2L NFATC2IP SH2B1 CD19 LAT SPNS1 RABEP2 MIR4517 MIR4721 ATP2A1-AS1 TUFM ATP2A1
esv3570454 Chr.16:28799004 - 29032129 on Build GRCh38 Gain ATXN2L NFATC2IP SH2B1 CD19 LAT SPNS1 RABEP2 MIR4517 MIR4721 ATP2A1-AS1 TUFM ATP2A1
nsv571805 Chr.16:28824174 - 29032129 on Build GRCh38 Loss ATXN2L NFATC2IP SH2B1 CD19 LAT SPNS1 RABEP2 MIR4517 MIR4721 ATP2A1-AS1 TUFM ATP2A1
dgv2830n100 Chr.16:28620264 - 29032542 on Build GRCh38 Gain MIR6862-2 CD19 LAT RABEP2 MIR4517 MIR4721 NPIPB8 TUFM ATP2A1 ATXN2L NFATC2IP SH2B1 EIF3C NPIPB9 SPNS1 SULT1A1 ATP2A1-AS1

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