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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2284389 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01203009_cn
Size
Availability Made To Order
Catalog # 4400291
Price 475.00
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441.65
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 24 - Exon 25
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 NP_001080.2
AB070929.1 BAB86781.1
AB210044.1 BAE06126.1
BC140895.1
BC146866.1
BC151840.1
U78735.1 AAC50967.1
X97187.1 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MIR3176 NPW MSLN ERVK13-1 MIR3180-5 CAPN15 MSRB1 KCTD5 C16orf91 MIR6511B1 MIR5587 TMEM204 SNORA10 NHLRC4 LMF1-AS1 HBA1 HBM TELO2 RGS11 SNORA64 NOXO1 HBQ1 ATP6V0C IFT140 LOC100134368 SPSB3 WFIKKN1 ABCA3 LOC100287175 WDR90 MIR6859-4 SNHG9 RPL23AP5 HN1L PKD1 LOC729652 CHTF18 SNRNP25 FAHD1 STUB1 AXIN1 METRN LOC105371045 HAGHL MPG LOC107987233 MRPL28 FAM234A FLJ42627 GNG13 RAB11FIP3 AMDHD2 DNASE1L2 TPSD1 E4F1 CASKIN1 UNKL NUBP2 ECI1 CCDC78 MRPS34 LOC105371049 LOC105371046 FBXL16 MIR4717 RHBDL1 DDX11L10 MIR940 MCRIP2 CCDC154 MAPK8IP3 LOC105371184 LMF1 NTHL1 NME4 CCNF NPRL3 PDIA2 HAGH MIR6768 LOC107984876 METTL26 SLC9A3R2 BAIAP3 POLR3K RHOT2 TSC2 LOC652276 CEMP1 PTX4 RPL3L LOC101929280 ARHGDIG HS3ST6 PRSS29P IGFALS LINC00235 MIR4516 LINC00254 MIR3677 SNORD60 UBE2I MIR3177 PDPK1 PRR25 HBZ SOX8 SSTR5 LOC106660606 SNHG19 RHBDF1 PIGQ RAB40C JMJD8 TPSAB1 PRSS27 DECR2 WASIR2 PRR35 NARFL LUC7L CLCN7 TMEM8A C1QTNF8 SYNGR3 FAM173A SSTR5-AS1 SNORA78 LOC105371047 HBA2 RAB26 GFER WDR24 CACNA1H NTN3 MIR662 MIR3178 MIR1225 MEIOB NME3 TRAF7 RPS2 RNF151 GNPTG BRICD5 TBC1D24 TBL3 TPSB2 ABCA17P C16orf59 RNPS1 EME2 TSR3 NDUFB10 MLST8 LOC105371038 RPUSD1 CRAMP1 MIR6767 ZNF598 PGP TPSG1
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss NPW MIR3180-5 SLC9A3R2 MIR6511B1 TSC2 SYNGR3 RAB26 GFER DNASE1L2 E4F1 CASKIN1 ECI1 MIR1225 MIR4516 LOC105371049 NOXO1 MIR3677 TRAF7 MIR4717 SNORD60 MIR940 BRICD5 TBL3 ABCA3 NTHL1 RNPS1 LOC106660606 SNHG19 MLST8 PKD1 ZNF598 PGP
nsv571201 Chr.16:2255538 - 2365929 on Build GRCh38 Loss RNPS1 LOC106660606 MIR3677 MIR4717 MIR940 ABCA17P ABCA3
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR6768 MIR3180-5 MIR6511B1 TSC2 LOC652276 CEMP1 RAB26 AMDHD2 DNASE1L2 NTN3 E4F1 CASKIN1 MIR3178 ECI1 MIR1225 MIR4516 LOC105371049 MIR3677 TRAF7 ATP6V0C MIR4717 SNORD60 MIR940 PDPK1 BRICD5 TBC1D24 ABCA17P C16orf59 ABCA3 RNPS1 LOC106660606 SNHG19 MLST8 CCNF PKD1 LOC729652 MIR6767 PGP
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion MIR3677 TRAF7 MIR4717 SNORD60 MIR940 BRICD5 ABCA3 RNPS1 LOC106660606 SNHG19 MLST8 RAB26 DNASE1L2 E4F1 CASKIN1 PGP ECI1
nsv571202 Chr.16:2278649 - 2289619 on Build GRCh38 Loss ABCA3

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