Hs01223506_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140851373 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_014005.4	1	3602	NP_054724.1
	NM_031857.1			NP_114063.1
	AB002343.1	1	3602
	AF152317.1			AAD43711.1
	AJ007610.1			CAC22257.1
	AK314303.1
	BC104802.1			AAI04803.1
	BC104804.1			AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA1
dgv1651e212	Chr.5:140838196 - 140852242 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA6 PCDHA1
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA1
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA1
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHGA7 PCDHA12 PCDHA7 PCDHB17P PCDHGB6 PCDHAC2 PCDHGB8P PCDHB19P PCDHA9 PCDHA3 PCDHB10 PCDHA1 PCDHA2 PCDHGA12 PCDHB4 PCDHB15 PCDHGB7 PCDHGB4 PCDHA10 PCDHA6 PCDHB3 PCDHB8 SLC25A2 PCDHA8 PCDHGA1 PCDHGA8 PCDHB16 LOC101926905 PCDHB2 PCDHB1 PCDHGA9 PCDHGB1 PCDHA5 PCDHGA2 PCDHB6 PCDHGB2 PCDHB11 PCDHB13 PCDHGB3 PCDHB18P PCDHB12 PCDHGA4 PCDHGA6 PCDHB7 PCDHGB5 PCDHB14 PCDHGA11 PCDHGA5 PCDHB5 PCDHB9 PCDHA4 PCDHA11 TAF7 PCDHA13 PCDHGA3 PCDHGA10 PCDHAC1
dgv1652e212	Chr.5:140839141 - 140864158 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA1
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA4 PCDHA11 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA1
nsv515909	Chr.5:140848414 - 140852761 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA6 PCDHA1
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA1
esv2421858	Chr.5:140844251 - 140857963 on Build GRCh38	Deletion	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA1
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA1
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA1
dgv10096n54	Chr.5:140847633 - 140852761 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA6 PCDHA1
esv26168	Chr.5:140842564 - 140859300 on Build GRCh38	Gain	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA1
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA1
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA1
nsv1024237	Chr.5:140810775 - 140852242 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA6 PCDHA1
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA1
nsv1135376	Chr.5:140849315 - 140859915 on Build GRCh38	Deletion	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA1
esv2657537	Chr.5:140850410 - 140855957 on Build GRCh38	Deletion	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA1
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	PCDHA2 VTRNA1-3 PCDHA5 HARS PCDHA7 PCDHA10 VTRNA1-2 PCDHA6 HARS2 PCDHA8 PCDHA4 PCDHA11 PCDHA9 VTRNA1-1 PCDHA3 PCDHA1 ZMAT2
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA1
dgv10097n54	Chr.5:140849850 - 140856743 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA1
esv3890744	Chr.5:140846323 - 140857963 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA1
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA1
dgv10098n54	Chr.5:140850785 - 140856743 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA4 PCDHA9 PCDHA5 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA1

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding