Hs01271955_cn

• Gene Symbol: C9orf139
• Assay Reference Genome Location: Chr.9:137030536 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 401563
• Gene Name: chromosome 9 open reading frame 139
• Gene Aliases: -
• Location: Chr.9:137027464-137037770 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf139	NM_207511.2			NP_997394.1
	AK124899.1			BAC85986.1

Target Gene Details

• Entrez Gene ID: 2529
• Gene Name: fucosyltransferase 7
• Gene Aliases: FucT-VII
• Location: Chr.9:137030174-137032840 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FUT7	NM_004479.3	2	2052	NP_004470.1
	BC086312.1	2	2052	AAH86312.1
	U08112.1			AAA56869.1
	U11282.1			AAA20468.1
	X78031.1	2	1325	CAA54962.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	ENTPD2 UAP1L1 GRIN1 ABCA2 PRR31 LCNL1 C9orf142 C9orf139 DPP7 MAN1B1 MIR3621 CLIC3 MAN1B1-AS1 SAPCD2 LOC101930307 LRRC26 PTGDS NPDC1 TMEM210 FUT7
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	UAP1L1 SLC34A3 CYSRT1 PRR31 LCNL1 TPRN MIR3621 MAN1B1-AS1 NPDC1 ENTPD8 FBXW5 NOXA1 SSNA1 RABL6 C9orf142 TOR4A NSMF DPP7 NRARP TRAF2 C8G MIR4479 LRRC26 PTGDS MAMDC4 STPG3 MIR7114 RNF208 ENTPD2 GRIN1 PHPT1 NELFB C9orf139 MAN1B1 RNF224 LCN12 TMEM210 MIR4292 FAM166A EDF1 TMEM203 ABCA2 EXD3 ANAPC2 CLIC3 SAPCD2 LOC101930307 NDOR1 TUBB4B C9orf172 CCDC183-AS1 C9orf173-AS1 CCDC183 PNPLA7 FUT7
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	ENTPD2 UAP1L1 ABCA2 PRR31 LCNL1 C9orf142 C9orf139 DPP7 MAN1B1 LCN12 CLIC3 C8G MAN1B1-AS1 SAPCD2 LOC101930307 PTGDS NPDC1 FUT7
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	UAP1L1 PRR31 LCNL1 MIR3621 MAN1B1-AS1 LCN10 LCN6 NPDC1 LOC100128593 FBXW5 MIR4674 MIR4673 DNLZ RABL6 PMPCA C9orf142 DPP7 TRAF2 C8G MIR4479 LRRC26 PTGDS SNHG7 EGFL7 MAMDC4 SNORA17A SNORA17B HSPC324 ENTPD2 MIR126 GRIN1 PHPT1 NALT1 C9orf139 MAN1B1 LCN12 SNAPC4 LCN15 INPP5E AGPAT2 TMEM210 NOTCH1 MIR4292 LINC01451 EDF1 MIR6722 SDCCAG3 FAM69B ABCA2 C9orf163 CLIC3 SAPCD2 LOC101930307 CARD9 SEC16A C9orf172 CCDC183-AS1 TMEM141 CCDC183 LCN8 FUT7
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	ENTPD2 UAP1L1 GRIN1 SSNA1 C9orf139 DPP7 ANAPC2 MAN1B1 MIR3621 MAN1B1-AS1 SAPCD2 LOC101930307 LRRC26 NPDC1 TMEM210 FUT7
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	ENTPD2 NPDC1 ABCA2 C9orf139 FUT7
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	UAP1L1 SLC34A3 CYSRT1 PRR31 LCNL1 TPRN MIR3621 MAN1B1-AS1 LCN10 LCN6 NPDC1 LOC100128593 FBXW5 SSNA1 RABL6 C9orf142 TOR4A DPP7 NRARP TRAF2 C8G MIR4479 LRRC26 PTGDS SNHG7 EGFL7 MAMDC4 STPG3 SNORA17A SNORA17B RNF208 HSPC324 ENTPD2 MIR126 GRIN1 PHPT1 NELFB C9orf139 MAN1B1 RNF224 LCN12 LCN15 AGPAT2 TMEM210 MIR4292 FAM166A LINC01451 EDF1 MIR6722 TMEM203 FAM69B ABCA2 EXD3 ANAPC2 CLIC3 SAPCD2 LOC101930307 NDOR1 TUBB4B C9orf172 CCDC183-AS1 C9orf173-AS1 TMEM141 CCDC183 LCN8 FUT7

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)

CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
leukocyte migration involved in immune response
protein glycosylation
protein N-linked glycosylation
fucosylation
L-fucose catabolic process

Function(s)

fucosyltransferase activity
alpha-(1->3)-fucosyltransferase activity