Hs01288446_cn

• Gene Symbol: LOC100131347
• Assay Reference Genome Location: Chr.17:39067906 on build GRCh38
• Cytoband: 17q12

Target Gene Details

• Entrez Gene ID: 100131347
• Gene Name: RAD52 motif containing 1 pseudogene
• Gene Aliases: -
• Location: Chr.17:39057019-39081451 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC100131347	NR_036551.1
	AK095115.1
	AK124220.1			BAC85811.1

Target Gene Details

• Entrez Gene ID: 57125
• Gene Name: plexin domain containing 1
• Gene Aliases: TEM3, TEM7
• Location: Chr.17:39063303-39151649 on Build GRCh38
• Assay Gene Location: Within Exon 14

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PLXDC1	NM_020405.4	14	1649	NP_065138.2
	AF279144.2	14	1519	AAG00869.2
	AF378753.1	14	1519	AAL11990.1
	AK093589.1	13	1948
	AK127539.1	13	1830	BAC87025.1
	AK303699.1	13	1336
	AK312999.1	14	1471
	AL833517.1	6	525
	AY704670.1	14	1883	AAV85657.1
	AY704671.1	15	2083	AAV85658.1
	AY704672.1	14	1829	AAV85659.1
	BC036059.1	14	1615	AAH36059.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv833440	Chr.17:39033205 - 39210437 on Build GRCh38	Loss	PLXDC1 CACNB1 ARL5C LOC100131347 RPL19 LRRC37A11P
nsv2046	Chr.17:39023022 - 39084760 on Build GRCh38	Deletion	PLXDC1 LOC100131347 LOC105371766 LRRC37A11P

More Information

Additional Information:

For this assay, SNP(s) [rs79258325] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

angiogenesis
spinal cord development

Function(s)

protein binding