Genomic Map
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Target Gene Details
Entrez Gene ID: | 55111 |
Gene Name: | pleckstrin homology domain containing J1 |
Gene Aliases: |
GNRPX |
Location: |
Chr.19:2229952-2236724 on Build GRCh38 |
Assay Gene Location: | Within Exon 4 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| PLEKHJ1 | NM_001300836.1 | NP_001287765.1 | ||
| NM_018049.2 | 6 | 987 | NP_060519.1 | |
| XM_017026924.1 | 4 | 1490 | XP_016882413.1 | |
| XM_017026925.1 | 4 | 1481 | XP_016882414.1 | |
| XM_017026926.1 | 5 | 1402 | XP_016882415.1 | |
| XM_017026927.1 | 5 | 1393 | XP_016882416.1 | |
| XM_017026928.1 | 6 | 1301 | XP_016882417.1 | |
| AK001159.1 | 6 | 963 | BAA91525.1 | |
| AK092742.1 | 3 | 2604 | ||
| AK097723.1 | 7 | 1994 | ||
| AK098725.1 | 6 | 1077 | ||
| BC003084.2 | 6 | 908 | AAH03084.1 | |
| BC008966.2 | 6 | 934 | AAH08966.1 | |
| BQ013786.1 | 1 | 276 | ||
| CN365243.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv2389 | Chr.19:2206862 - 2240689 on Build GRCh38 | Insertion |
 SF3A2
PLEKHJ1
LOC105372239
MIR6789
MIR1227
DOT1L
|
| nsv578382 | Chr.19:2194897 - 2260362 on Build GRCh38 | Loss |
SF3A2
PLEKHJ1
AMH
LOC105372239
MIR6789
MIR4321
JSRP1
MIR1227
DOT1L
|
| dgv6218n54 | Chr.19:2221793 - 2336009 on Build GRCh38 | Loss |
AMH
LINGO3
OAZ1
LOC105372239
JSRP1
MIR1227
C19orf35
SPPL2B
SF3A2
PLEKHJ1
MIR6789
LSM7
MIR4321
DOT1L
|
| nsv953943 | Chr.19:2169602 - 2236001 on Build GRCh38 | Deletion |
PLEKHJ1
LOC105372239
MIR6789
MIR1227
DOT1L
|
| nsv833706 | Chr.19:2131211 - 2249764 on Build GRCh38 | Loss |
AP3D1
SF3A2
PLEKHJ1
AMH
LOC105372239
MIR6789
MIR1227
DOT1L
|
| nsv578383 | Chr.19:2214058 - 2285197 on Build GRCh38 | Loss |
SF3A2
PLEKHJ1
AMH
OAZ1
LOC105372239
MIR6789
MIR4321
JSRP1
MIR1227
DOT1L
C19orf35
|
| nsv833707 | Chr.19:2187092 - 2372223 on Build GRCh38 | Loss |
AMH
LINGO3
OAZ1
LOC105372239
JSRP1
MIR1227
C19orf35
SPPL2B
SF3A2
PLEKHJ1
MIR6789
LSM7
MIR4321
DOT1L
|
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Additional Information:
For this assay, SNP(s) [rs80224142] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
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