Genomic Map
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Target Gene Details
Entrez Gene ID: | 5777 |
Gene Name: | protein tyrosine phosphatase, non-receptor type 6 |
Gene Aliases: |
HCP, HCPH, HPTP1C, PTP-1C, SH-PTP1, SHP-1, SHP-1L, SHP1 |
Location: |
Chr.12:6946576-6961316 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 11 - Exon 12 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| PTPN6 | NM_002831.5 | NP_002822.2 | ||
| NM_080548.4 | NP_536858.1 | |||
| NM_080549.3 | NP_536859.1 | |||
| XM_006718994.1 | XP_006719057.1 | |||
| XM_011520988.1 | XP_011519290.1 | |||
| AF178946.1 | AAD53317.1 | |||
| AK223629.1 | BAD97349.1 | |||
| AK290421.1 | ||||
| AK298470.1 | ||||
| AK300167.1 | ||||
| AK308230.1 | ||||
| AK313379.1 | ||||
| BC002523.2 | AAH02523.1 | |||
| BC007667.2 | AAH07667.1 | |||
| BM006699.1 | ||||
| BT007390.1 | AAP36054.1 | |||
| M74903.1 | AAA35963.1 | |||
| M77273.1 | AAA36610.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv952791 | Chr.12:6954538 - 6961337 on Build GRCh38 | Deletion |
 PTPN6
|
| nsv1047373 | Chr.12:6902891 - 7055754 on Build GRCh38 | Gain |
ENO2
PHB2
MIR200C
RNU7-1
PTPN6
LOC105369635
LRRC23
SCARNA12
C12orf57
EMG1
MIR141
ATN1
LPCAT3
|
| dgv2325n54 | Chr.12:6946329 - 6960947 on Build GRCh38 | Loss |
PTPN6
|
| nsv509453 | Chr.12:6896530 - 7007852 on Build GRCh38 | Insertion |
ENO2
PHB2
MIR200C
RNU7-1
PTPN6
LOC105369635
LRRC23
SCARNA12
C12orf57
EMG1
MIR141
ATN1
LPCAT3
|
| nsv1035811 | Chr.12:6876316 - 6994911 on Build GRCh38 | Gain |
ENO2
PHB2
MIR200C
RNU7-1
PTPN6
RPL13P5
LOC105369635
LOC105369632
LRRC23
SCARNA12
C12orf57
EMG1
MIR141
ATN1
DSTNP2
LPCAT3
|
| dgv2326n54 | Chr.12:6951683 - 6960947 on Build GRCh38 | Loss |
PTPN6
|
Back To TopMore Information
Set Membership: |
Intragenic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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