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See other SLC4A11 CNV Assays ›
Gene Symbol
SLC4A11
Assay Reference Genome
Location

Chr.20:3227539 on build GRCh38
Cytoband
20p13
Assay ID Hs01368836_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 83959

Gene Name:

 solute carrier family 4 member 11

Gene Aliases:

 BTR1, CDPD1, CHED, CHED2, NABC1, dJ794I6.2

Location:

 Chr.20:3227417-3241483 on Build GRCh38

Assay Gene Location:

 Within Exon 24
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SLC4A11 NM_001174089.1 20 2980 NP_001167560.1
NM_001174090.1 20 3130 NP_001167561.1
NM_032034.3 19 2972 NP_114423.1
NR_135000.1 20 2974
XM_005260856.4 19 3354 XP_005260913.1
XM_005260857.1 20 2999 XP_005260914.1
XM_011529383.2 20 4575 XP_011527685.1
XM_011529384.1 20 3217 XP_011527686.1
XM_011529385.1 20 3044 XP_011527687.1
XM_017028093.1 20 3348 XP_016883582.1
XM_017028094.1 20 2852 XP_016883583.1
XM_017028095.1 19 3209 XP_016883584.1
XM_017028096.1 21 3229 XP_016883585.1
AF336127.1 19 2972 AAK16734.1
AK075303.1 14 2247 BAC11536.1
AK091157.1
AK296508.1 20 3130
BM666654.1 1 135
CA312226.1 1 132
HY211104.1 1 120

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1067207 Chr.20:3191285 - 3404426 on Build GRCh38 Gain ITPA SLC4A11 C20orf194 DDRGK1
nsv585276 Chr.20:3030542 - 3366307 on Build GRCh38 Gain AVP PTPRA OXT C20orf194 MRPS26 DDRGK1 UBOX5-AS1 LZTS3 FASTKD5 ITPA SLC4A11 GNRH2 UBOX5
nsv952979 Chr.20:3219555 - 3244454 on Build GRCh38 Deletion ITPA SLC4A11
nsv528355 Chr.20:3190691 - 3242579 on Build GRCh38 Loss ITPA SLC4A11 DDRGK1
nsv833898 Chr.20:3147423 - 3309891 on Build GRCh38 Gain+Loss UBOX5-AS1 LZTS3 FASTKD5 ITPA SLC4A11 C20orf194 UBOX5 DDRGK1

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More Information


Additional Information:

For this assay, SNP(s) [rs77978636] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

secondary carrier transporter

Gene Ontology Categories:

Function(s) Process(es)


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