Genomic Map
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Target Gene Details
Entrez Gene ID: | 6472 |
Gene Name: | serine hydroxymethyltransferase 2 |
Gene Aliases: |
GLYA, HEL-S-51e, SHMT |
Location: |
Chr.12:57229573-57234935 on Build GRCh38 |
Assay Gene Location: | Within Exon 14 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SHMT2 | NM_001166356.1 | 12 | 2061 | NP_001159828.1 |
| NM_001166357.1 | 12 | 2153 | NP_001159829.1 | |
| NM_001166358.1 | 12 | 2052 | NP_001159830.1 | |
| NM_001166359.1 | 12 | 1945 | NP_001159831.1 | |
| NM_005412.5 | 12 | 2091 | NP_005403.2 | |
| NR_029415.1 | 11 | 1893 | ||
| NR_029416.1 | 11 | 1972 | ||
| NR_029417.1 | 11 | 2011 | ||
| NR_048562.1 | 11 | 2101 | ||
| XM_011538675.2 | XP_011536977.1 | |||
| XM_011538676.2 | XP_011536978.1 | |||
| XM_011538677.2 | 11 | 1932 | XP_011536979.1 | |
| XM_011538678.2 | 11 | 1914 | XP_011536980.1 | |
| AK055053.1 | ||||
| AK223555.1 | BAD97275.1 | |||
| AK297173.1 | 11 | 1853 | ||
| AK303827.1 | ||||
| AK315916.1 | ||||
| BC011911.2 | 12 | 1895 | AAH11911.1 | |
| BC013677.2 | AAH13677.1 | |||
| BC032584.1 | AAH32584.1 | |||
| BC044211.1 | AAH44211.1 | |||
| BC091501.1 | 11 | 1815 | AAH91501.1 | |
| BX647711.1 | CAI46021.1 | |||
| BX648847.1 | ||||
| EU668344.1 | 12 | 1895 | ||
| L11932.1 | AAA63258.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv482992 | Chr.12:56206217 - 57706217 on Build GRCh38 | Gain+Loss |
 LOC101927583
SHMT2
INHBC
RNF41
ZBTB39
MIP
TAC3
MYO1A
TIMELESS
CNPY2
HSD17B6
SPRYD4
COQ10A
OS9
PAN2
KIF5A
DDIT3
SLC26A10
MIR1228
MIR616
NEMP1
NAB2
GPR182
RDH16
GLS2
APOF
ANKRD52
MBD6
PTGES3
STAT2
DTX3
NACA
ATP5B
STAC3
CS
HBCBP
MIR6758
NABP2
BAZ2A
SLC39A5
ARHGAP9
GLI1
SNORA105C
RBMS2
LRP1-AS
IL23A
STAT6
B4GALNT1
ARHGEF25
SNORD59B
DCTN2
NXPH4
NDUFA4L2
PIP4K2C
R3HDM2
PRIM1
INHBE
SDR9C7
LRP1
SNORD59A
MARS
|
| nsv519293 | Chr.12:57189889 - 57243810 on Build GRCh38 | Loss |
NXPH4
SHMT2
NDUFA4L2
MIR1228
LRP1
STAC3
|
| nsv952189 | Chr.12:57127118 - 57245617 on Build GRCh38 | Deletion |
NXPH4
SHMT2
NDUFA4L2
MIR1228
LRP1
LRP1-AS
STAC3
|
| dgv96n21 | Chr.12:57139199 - 57243810 on Build GRCh38 | Loss |
NXPH4
SHMT2
NDUFA4L2
MIR1228
LRP1
LRP1-AS
STAC3
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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