Genomic Map
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Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SCAF1 | NM_021228.2 | 7 | 2040 | NP_067051.2 |
| XM_005259122.4 | 7 | 2323 | XP_005259179.1 | |
| XM_011527194.2 | 7 | 1965 | XP_011525496.1 | |
| XM_017027083.1 | 4 | 1767 | XP_016882572.1 | |
| AK024444.1 | 7 | 2040 | ||
| BC011662.2 | AAH11662.2 | |||
| BC053992.1 | 6 | 1927 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss |
 PRMT1
SCAF1
PRR12
CPT1C
IRF3
BCL2L12
NOSIP
ADM5
MIR5088
RRAS
PRRG2
|
| nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss |
PRMT1
SCAF1
PRR12
CPT1C
IRF3
BCL2L12
NOSIP
ADM5
MIR5088
RRAS
PRRG2
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
SNORD35B
SNAR-A10
SNAR-A1
DHDH
SNAR-G2
SNAR-A4
MIR150
TSKS
RPS11
ZNF473
MIR6798
SNAR-A5
SNAR-C5
PTOV1-AS1
CD37
SPACA4
IZUMO1
PPFIA3
PLA2G4C-AS1
GYS1
FUZ
CCDC114
SNORD33
MIR4750
MIR4751
TRPM4
SLC6A16
SNAR-B2
C19orf68
CA11
RASIP1
SNAR-A2
RPL13A
ALDH16A1
GRIN2D
SNAR-A11
SNAR-G1
PRR12
FUT1
MIR4324
TBC1D17
SIGLEC16
VRK3
BCL2L12
SNRNP70
FAM83E
PPP1R15A
SPHK2
LOC105372430
RRAS
RCN3
GFY
LIG1
CGB8
NUP62
ZNF114
RPL18
SNAR-C3
TEAD2
CGB1
PLA2G4C
FTL
ATF5
ELSPBP1
SNAR-C2
DKKL1
FLJ26850
NTF4
SNAR-D
FGF21
SNAR-A9
ADM5
SYNGR4
SCAF1
GRWD1
SNORD34
CGB5
PTOV1-AS2
FUT2
BAX
PNKP
CARD8
LOC105447645
LMTK3
SIGLEC11
SNORD32A
IRF3
MIR6799
FCGRT
SNAR-A6
MED25
IL4I1
SNORD35A
SNAR-B1
LOC101059948
HSD17B14
LOC100287477
SLC17A7
KDELR1
KCNA7
SNAR-C1
SEC1P
LIN7B
MAMSTR
NOSIP
CYTH2
DBP
TMEM143
BCAT2
MIR6800
RUVBL2
MIR5088
KCNJ14
CGB7
CABP5
LHB
CARD8-AS1
SNAR-A12
BSPH1
PTH2
SNAR-A8
SNAR-A14
SNAR-C4
NTN5
PTOV1
CGB3
CPT1C
CGB2
TULP2
AP2A1
SNAR-A13
SNAR-A7
PRRG2
FLT3LG
HRC
NUCB1
PRMT1
NUCB1-AS1
C19orf73
CCDC155
AKT1S1
PIH1D1
MIR4749
SULT2B1
PLEKHA4
EMP3
LOC101928295
SNAR-A3
|
| nsv817854 | Chr.19:49618821 - 49726387 on Build GRCh38 | Gain |
PRMT1
SCAF1
PRR12
CPT1C
IRF3
BCL2L12
ADM5
MIR5088
RRAS
|
| nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss |
SCAF1
IRF3
|
| nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion |
PRR12
TBC1D17
NOSIP
MIR6800
ADM5
MIR5088
TSKS
SCAF1
PTOV1-AS2
BCL2L12
PTOV1-AS1
PNKP
RRAS
PTOV1
CPT1C
IRF3
AP2A1
MIR6799
MED25
FUZ
IL4I1
MIR4750
NUP62
MIR4751
PRRG2
PRMT1
ATF5
AKT1S1
MIR4749
|
| nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain |
PRMT1
SCAF1
PRR12
CPT1C
IRF3
BCL2L12
NOSIP
ADM5
MIR5088
RRAS
PRRG2
|
| nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion |
SNORD35B
PRR12
NOSIP
MIR6800
ADM5
MIR5088
MIR150
TSKS
RPS11
SCAF1
SNORD34
BCL2L12
PTOV1-AS1
RRAS
RCN3
CPT1C
SNORD32A
IRF3
AP2A1
MIR6799
FCGRT
MED25
FUZ
SNORD33
SNORD35A
PRRG2
PRMT1
RPL13A
|
| nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss |
PRMT1
SCAF1
PRR12
IRF3
BCL2L12
NOSIP
RRAS
PRRG2
|
| nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss |
SCAF1
IRF3
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Molecular Function -
RNA metabolism protein
RNA processing factor
RNA splicing factor
nucleic acid metabolism protein
Gene Ontology Categories:
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