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See other SHMT2 CNV Assays ›
Gene Symbol
SHMT2
Assay Reference Genome
Location

Chr.12:57231778 on build GRCh38
Cytoband
12q13.3
Assay ID Hs01424646_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 6472

Gene Name:

 serine hydroxymethyltransferase 2

Gene Aliases:

 GLYA, HEL-S-51e, SHMT

Location:

 Chr.12:57229573-57234935 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 5 - Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SHMT2 NM_001166356.1 NP_001159828.1
NM_001166357.1 NP_001159829.1
NM_001166358.1 NP_001159830.1
NM_001166359.1 NP_001159831.1
NM_005412.5 NP_005403.2
NR_029415.1
NR_029416.1
NR_029417.1
NR_048562.1
XM_011538675.2 XP_011536977.1
XM_011538676.2 XP_011536978.1
XM_011538677.2 XP_011536979.1
XM_011538678.2 XP_011536980.1
AK055053.1 2 1077
AK223555.1 BAD97275.1
AK295941.1
AK296183.1
AK297173.1
AK298231.1
AK301339.1
AK301443.1
AK303827.1
AK315916.1
BC011911.2 AAH11911.1
BC013677.2 AAH13677.1
BC032584.1 AAH32584.1
BC044211.1 AAH44211.1
BC091501.1 AAH91501.1
BT006866.1 AAP35512.1
BX647711.1 CAI46021.1
BX648847.1
CN395976.1
DA052422.1
DC386590.1
EU668344.1
KU178333.1
KU178334.1
L11932.1 AAA63258.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482992 Chr.12:56206217 - 57706217 on Build GRCh38 Gain+Loss NACA B4GALNT1 INHBC ANKRD52 MIP PTGES3 MBD6 STAT6 MIR1228 PAN2 ATP5B GLS2 SLC39A5 HSD17B6 STAT2 MYO1A IL23A NDUFA4L2 SNORD59A DTX3 COQ10A MARS MIR616 GPR182 LOC101927583 RDH16 SNORA105C CS SHMT2 ARHGEF25 OS9 SDR9C7 CNPY2 GLI1 MIR6758 STAC3 DDIT3 SNORD59B TAC3 PRIM1 NEMP1 HBCBP LRP1 DCTN2 RBMS2 NXPH4 NAB2 APOF SPRYD4 BAZ2A PIP4K2C SLC26A10 INHBE R3HDM2 RNF41 KIF5A NABP2 LRP1-AS ZBTB39 TIMELESS ARHGAP9
nsv519293 Chr.12:57189889 - 57243810 on Build GRCh38 Loss NDUFA4L2 NXPH4 MIR1228 STAC3 LRP1 SHMT2
nsv952189 Chr.12:57127118 - 57245617 on Build GRCh38 Deletion NDUFA4L2 NXPH4 LRP1-AS MIR1228 STAC3 LRP1 SHMT2
dgv96n21 Chr.12:57139199 - 57243810 on Build GRCh38 Loss NDUFA4L2 NXPH4 LRP1-AS MIR1228 STAC3 LRP1 SHMT2

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