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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2185327 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01431509_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 11 - Exon 11
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 NP_065815.1
AB037727.1 BAA92544.1
AF451977.1 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication PRR35 NME3 NME4 RAB11FIP3 LUC7L MIR6767 LOC105371045 TSR3 DDX11L10 CRAMP1 SNORA10 TELO2 RPL3L ATP6V0C C16orf59 NTHL1 RAB40C MIR3177 WASIR2 LOC106660606 NPW DNASE1L2 RHBDF1 MIR1225 SPSB3 TBC1D24 TPSAB1 LMF1 MIR6511B1 CCDC154 MIR5587 PKD1 HBA2 FAM234A HBM SNORA78 AMDHD2 PRR25 HBA1 ECI1 CACNA1H WDR90 MAPK8IP3 TSC2 MIR6768 POLR3K MRPL28 RHBDL1 SSTR5-AS1 FBXL16 HBQ1 TPSG1 ABCA3 DECR2 MIR3176 RAB26 GNPTG TBL3 PRSS29P MIR662 STUB1 SLC9A3R2 MRPS34 RPUSD1 RPS2 E4F1 TPSB2 PDPK1 FAM173A NTN3 LOC105371038 NOXO1 LOC101929280 PGP BRICD5 HAGH C16orf91 FLJ42627 LOC105371049 LINC00254 MSRB1 LOC100134368 MIR940 LOC100287175 RNPS1 MIR4717 CHTF18 NUBP2 SNHG19 WFIKKN1 METTL26 ARHGDIG BAIAP3 SYNGR3 LOC107984876 LOC105371184 NARFL C1QTNF8 LOC652276 TMEM8A ZNF598 SOX8 IFT140 CLCN7 GFER RHOT2 MPG LOC729652 MSLN HBZ CEMP1 PRSS27 UNKL MLST8 WDR24 SNORD60 MIR3178 RNF151 MIR6859-4 TRAF7 TMEM204 NDUFB10 JMJD8 CCDC78 MEIOB SNORA64 EME2 HAGHL PDIA2 PIGQ AXIN1 IGFALS MCRIP2 KCTD5 CCNF NPRL3 MIR4516 HS3ST6 PTX4 CASKIN1 LOC105371047 RGS11 LOC107987233 SNHG9 ABCA17P LOC105371046 MIR3677 HN1L LMF1-AS1 RPL23AP5 UBE2I METRN NHLRC4 SSTR5 LINC00235 CAPN15 FAHD1 ERVK13-1 TPSD1 GNG13 SNRNP25 MIR3180-5
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss TSC2 RNPS1 MIR4717 SNHG19 ABCA3 RAB26 SYNGR3 TBL3 MIR4516 CASKIN1 SLC9A3R2 NTHL1 LOC106660606 NPW DNASE1L2 MIR3677 ZNF598 MIR1225 E4F1 GFER MIR6511B1 NOXO1 PGP BRICD5 PKD1 LOC105371049 MLST8 SNORD60 ECI1 MIR3180-5 MIR940 TRAF7
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss DNASE1L2 TSC2 MIR1225 E4F1 MIR6511B1 SNHG19 PGP BRICD5 PKD1 RAB26 MIR4516 LOC105371049 MLST8 CASKIN1 SNORD60 ECI1 MIR3180-5 TRAF7
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss DNASE1L2 MIR3677 E4F1 RNPS1 SNHG19 PGP BRICD5 RAB26 MLST8 CASKIN1 SNORD60 ECI1 MIR940 TRAF7 LOC106660606
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss RAB26 TSC2 MIR1225 MIR4516 LOC105371049 CASKIN1 SNORD60 MIR6511B1 SNHG19 MIR3180-5 TRAF7 PKD1
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss DNASE1L2 MIR3677 E4F1 RNPS1 MLST8 CASKIN1 ECI1 PGP MIR940 TRAF7 BRICD5 LOC106660606
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain TSC2 RNPS1 MIR6768 MIR6767 MIR4717 SNHG19 ABCA3 CCNF RAB26 MIR4516 CASKIN1 ATP6V0C C16orf59 ABCA17P LOC106660606 LOC652276 DNASE1L2 MIR3677 MIR1225 E4F1 TBC1D24 PDPK1 NTN3 MIR6511B1 LOC729652 PGP BRICD5 PKD1 AMDHD2 CEMP1 LOC105371049 MLST8 SNORD60 ECI1 MIR3178 MIR3180-5 MIR940 TRAF7
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion DNASE1L2 MIR3677 E4F1 RNPS1 MIR4717 SNHG19 PGP BRICD5 ABCA3 RAB26 MLST8 CASKIN1 SNORD60 ECI1 MIR940 TRAF7 LOC106660606

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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