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See other B4GALNT1 CNV Assays ›
Gene Symbol
B4GALNT1
Assay Reference Genome
Location

Chr.12:57625137 on build GRCh38
Cytoband
12q13.3
Assay ID Hs01502422_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2583

Gene Name:

 beta-1,4-N-acetyl-galactosaminyltransferase 1

Gene Aliases:

 GALGT, GALNACT, GalNAc-T, SPG26

Location:

 Chr.12:57623409-57633239 on Build GRCh38

Assay Gene Location:

 Within Exon 13
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
B4GALNT1 XM_005268773.4 11 3671 XP_005268830.1
XM_011538147.2 12 3689 XP_011536449.1
XM_011538148.2 12 3656 XP_011536450.1
XM_017019140.1 11 3773 XP_016874629.1
XM_017019141.1 11 3485 XP_016874630.1
XM_017019142.1 11 3350 XP_016874631.1
AB209460.1 10 3853 BAD92697.1

Target Gene Details

Entrez Gene ID:

 65012

Gene Name:

 solute carrier family 26 member 10

Gene Aliases:

 -

Location:

 Chr.12:57619910-57626151 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 10 - Intron 11
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SLC26A10 NM_133489.2 NP_597996.2
AF331523.1 AAM92901.1
AK122981.1 BAC85515.1
AK314085.1
AL050358.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482992 Chr.12:56206217 - 57706217 on Build GRCh38 Gain+Loss LOC101927583 MYO1A ZBTB39 NABP2 OS9 DDIT3 DTX3 PRIM1 ATP5B STAC3 GPR182 LRP1 MARS STAT2 B4GALNT1 SLC26A10 IL23A KIF5A COQ10A NXPH4 SNORA105C PAN2 MIR616 GLS2 DCTN2 GLI1 NEMP1 NDUFA4L2 ANKRD52 RNF41 HBCBP SLC39A5 RDH16 INHBC TAC3 APOF ARHGEF25 CS RBMS2 SHMT2 MIP MIR6758 BAZ2A SNORD59A INHBE MIR1228 CNPY2 PTGES3 NACA MBD6 ARHGAP9 PIP4K2C LRP1-AS SNORD59B NAB2 R3HDM2 STAT6 SPRYD4 TIMELESS SDR9C7 HSD17B6

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More Information


Additional Information:

For this assay, SNP(s) [rs73347918] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

transporter

Gene Ontology Categories:

Function(s) Process(es)


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