Genomic Map
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Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SCAF1 | NM_021228.2 | 7 | 2881 | NP_067051.2 |
| XM_005259122.4 | 7 | 3164 | XP_005259179.1 | |
| XM_011527194.2 | 7 | 2806 | XP_011525496.1 | |
| XM_017027083.1 | 4 | 2608 | XP_016882572.1 | |
| AK024444.1 | 7 | 2881 | ||
| BC011662.2 | AAH11662.2 | |||
| BC018398.1 | 1 | 272 | AAH18398.1 | |
| BC053992.1 | 6 | 2768 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss |
 MIR5088
CPT1C
BCL2L12
RRAS
ADM5
IRF3
SCAF1
PRMT1
NOSIP
PRRG2
PRR12
|
| nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss |
MIR5088
CPT1C
BCL2L12
RRAS
ADM5
IRF3
SCAF1
PRMT1
NOSIP
PRRG2
PRR12
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
GRWD1
CYTH2
CGB1
LIN7B
RPL18
IRF3
MIR6799
PPP1R15A
SIGLEC16
MAMSTR
SNAR-A3
NUCB1
NTN5
BAX
SNAR-D
SNAR-A7
SLC6A16
FTL
CGB3
CGB8
FGF21
FUT2
PIH1D1
SULT2B1
LOC100287477
SNORD33
NTF4
DKKL1
PRRG2
AP2A1
SNAR-C3
LOC101928295
BCL2L12
SPACA4
FLJ26850
SNAR-A14
TSKS
PNKP
TBC1D17
EMP3
TEAD2
DHDH
TULP2
PLA2G4C-AS1
SNAR-A12
AKT1S1
SIGLEC11
FAM83E
GRIN2D
FCGRT
HRC
MIR5088
SNAR-A6
CGB7
ATF5
RPS11
CGB5
IL4I1
NOSIP
SNAR-A11
SNAR-C4
PLEKHA4
SNAR-A4
RCN3
FLT3LG
KDELR1
PTOV1-AS1
SNAR-A10
LMTK3
SCAF1
PRMT1
SNORD35B
SNAR-C2
ELSPBP1
RPL13A
RRAS
CD37
MIR4750
SNORD34
LHB
SNAR-A13
DBP
SNAR-B1
SLC17A7
PTOV1
PRR12
SEC1P
SNAR-C5
LOC101059948
CCDC155
MIR4751
CGB2
SNORD32A
SNAR-B2
MIR150
CA11
PTOV1-AS2
RUVBL2
TRPM4
MIR6800
SNAR-A5
PTH2
KCNA7
C19orf73
MIR4749
SNAR-G1
SNAR-G2
BCAT2
CCDC114
LIG1
TMEM143
VRK3
SNAR-A8
BSPH1
LOC105372430
RASIP1
SPHK2
ZNF114
C19orf68
KCNJ14
ALDH16A1
NUCB1-AS1
CARD8-AS1
IZUMO1
SNAR-A1
LOC105447645
ZNF473
NUP62
PLA2G4C
SNRNP70
SNAR-A2
SNAR-C1
CABP5
CARD8
PPFIA3
ADM5
SYNGR4
FUT1
CPT1C
GYS1
MED25
HSD17B14
SNORD35A
GFY
MIR6798
SNAR-A9
MIR4324
FUZ
|
| nsv817854 | Chr.19:49618821 - 49726387 on Build GRCh38 | Gain |
MIR5088
CPT1C
BCL2L12
RRAS
ADM5
IRF3
SCAF1
PRMT1
PRR12
|
| nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss |
IRF3
SCAF1
|
| nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion |
RRAS
AKT1S1
MIR4750
IRF3
MIR6799
PTOV1
PRR12
MIR5088
ATF5
MIR4751
IL4I1
PTOV1-AS2
NOSIP
NUP62
MIR6800
MIR4749
ADM5
PRRG2
AP2A1
CPT1C
MED25
BCL2L12
PTOV1-AS1
TSKS
FUZ
SCAF1
PRMT1
PNKP
TBC1D17
|
| nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain |
MIR5088
CPT1C
BCL2L12
RRAS
ADM5
IRF3
SCAF1
PRMT1
NOSIP
PRRG2
PRR12
|
| nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion |
RPL13A
RRAS
SNORD34
IRF3
FCGRT
MIR6799
PRR12
MIR5088
RPS11
SNORD32A
MIR150
NOSIP
MIR6800
ADM5
SNORD33
RCN3
PRRG2
AP2A1
CPT1C
MED25
BCL2L12
SNORD35A
PTOV1-AS1
TSKS
FUZ
SCAF1
PRMT1
SNORD35B
|
| nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss |
BCL2L12
RRAS
IRF3
SCAF1
PRMT1
NOSIP
PRRG2
PRR12
|
| nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss |
IRF3
SCAF1
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Molecular Function -
RNA metabolism protein
RNA processing factor
RNA splicing factor
nucleic acid metabolism protein
Gene Ontology Categories:
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