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System Message

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Gene Symbol: PUF60
Assay Reference Genome Location: Chr.8:143818045 on build GRCh38
Cytoband: 8q24.3

Assay ID

Hs01578659_cn

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Availability	Made To Order
Catalog #	4400291
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Genomic Map
Assay Details
More Information

Assay Details

Target Gene Details

Entrez Gene ID:	22827
Gene Name:	poly(U) binding splicing factor 60
Gene Aliases:	FIR, RoBPI, SIAHBP1, VRJS
Location:	Chr.8:143816344-143829386 on Build GRCh38
Assay Gene Location:	Overlaps Intron 10 - Exon 11

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PUF60	NM_001136033.2			NP_001129505.1
	NM_001271096.1			NP_001258025.1
	NM_001271097.1			NP_001258026.1
	NM_001271098.1			NP_001258027.1
	NM_001271099.1			NP_001258028.1
	NM_001271100.1			NP_001258029.1
	NM_014281.4			NP_055096.2
	NM_078480.2			NP_510965.1
	XM_011516929.2			XP_011515231.1
	XM_011516930.2			XP_011515232.1
	XM_017013234.1			XP_016868723.1
	XM_017013235.1			XP_016868724.1
	XM_017013236.1			XP_016868725.1
	XM_017013237.1			XP_016868726.1
	XM_017013238.1			XP_016868727.1
	XM_017013239.1			XP_016868728.1
	XM_017013240.1			XP_016868729.1
	AF114818.1			AAF23589.1
	AF190744.1			AAF05605.1
	AF217197.2			AAF27522.2
	AK055941.1
	AK292373.1
	AL522753.3
	BC008875.2			AAH08875.1
	BC009734.1			AAH09734.1
	BC011265.1			AAH11265.1
	BC011979.1			AAH11979.1
	BG771821.1
	BX418925.2
	CR457143.1			CAG33424.1
	CT000277.1
	CX163878.1
	U51586.1			AAB41656.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv6442	Chr.8:143781830 - 143826293 on Build GRCh38	Deletion	MIR937 PUF60 LOC642574 SCRIB
nsv950014	Chr.8:143786431 - 143842128 on Build GRCh38	Deletion	MIR937 NRBP2 PUF60 LOC642574 SCRIB MIR6845
nsv612896	Chr.8:143778707 - 143874693 on Build GRCh38	Loss	MIR937 EPPK1 NRBP2 PUF60 LOC642574 SCRIB MIR6845
nsv612895	Chr.8:143719073 - 143827718 on Build GRCh38	Loss	MIR937 MIR4664 FAM83H-AS1 MAPK15 PUF60 LOC642574 SCRIB LOC105375800 FAM83H
nsv1161815	Chr.8:143775169 - 144080674 on Build GRCh38	Deletion	EPPK1 NRBP2 PUF60 LOC642574 PARP10 SMPD5 EXOSC4 MIR6845 MIR661 MIR937 MIR6847 OPLAH MIR6846 SPATC1 SCRIB PLEC GRINA
nsv466009	Chr.8:143812326 - 143900795 on Build GRCh38	Loss	MIR937 EPPK1 NRBP2 PUF60 SCRIB MIR6845

More Information

Set Membership:

Intragenic

Non-exonic

DGV Variation

Panther Classification:

Molecular Function -

RNA splicing factor

Gene Ontology Categories:

Function(s) Process(es)

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