Hs01628080_cn

• Gene Symbol: C9orf139
• Assay Reference Genome Location: Chr.9:137032122 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 401563
• Gene Name: chromosome 9 open reading frame 139
• Gene Aliases: -
• Location: Chr.9:137027464-137037770 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf139	NM_207511.2	2	573	NP_997394.1
	XM_017014717.1			XP_016870206.1
	AK124899.1	2	573	BAC85986.1

Target Gene Details

• Entrez Gene ID: 2529
• Gene Name: fucosyltransferase 7
• Gene Aliases: FucT-VII
• Location: Chr.9:137030174-137032840 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FUT7	NM_004479.3	1	719	NP_004470.1
	AK313124.1	1	353
	BC086312.1	1	719	AAH86312.1
	U08112.1			AAA56869.1
	U11282.1			AAA20468.1
	X78031.1			CAA54962.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	MIR3621 PRR31 GRIN1 FUT7 LOC101930307 MAN1B1 SAPCD2 ABCA2 CLIC3 MAN1B1-AS1 PTGDS C9orf139 NPDC1 ENTPD2 TMEM210 LRRC26 C9orf142 LCNL1 DPP7 UAP1L1
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	MAMDC4 TRAF2 TUBB4B NOXA1 SAPCD2 ENTPD2 NDOR1 EDF1 C9orf173-AS1 RABL6 TPRN ENTPD8 CCDC183-AS1 C9orf172 SSNA1 ANAPC2 C9orf139 RNF208 MIR7114 PNPLA7 LCNL1 MIR3621 PHPT1 TMEM203 CYSRT1 FBXW5 LOC101930307 MIR4479 MAN1B1 TOR4A NRARP RNF224 ABCA2 MIR4292 MAN1B1-AS1 PTGDS NELFB TMEM210 PRR31 GRIN1 CCDC183 FAM166A FUT7 SLC34A3 NSMF EXD3 STPG3 LCN12 CLIC3 NPDC1 LRRC26 C9orf142 C8G DPP7 UAP1L1
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	PRR31 FUT7 LOC101930307 MAN1B1 SAPCD2 LCN12 ABCA2 CLIC3 MAN1B1-AS1 PTGDS C9orf139 NPDC1 ENTPD2 C9orf142 LCNL1 C8G DPP7 UAP1L1
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MAMDC4 TRAF2 MIR4673 SAPCD2 FAM69B LINC01451 C9orf163 ENTPD2 LCN15 EDF1 SNORA17A MIR126 RABL6 INPP5E SDCCAG3 SNHG7 CCDC183-AS1 C9orf172 AGPAT2 SNAPC4 C9orf139 NALT1 SEC16A LCNL1 LCN8 MIR3621 PHPT1 FBXW5 LOC101930307 MIR4479 MAN1B1 HSPC324 ABCA2 MIR4292 MAN1B1-AS1 PTGDS MIR6722 TMEM210 CARD9 PRR31 GRIN1 SNORA17B CCDC183 FUT7 NOTCH1 DNLZ LCN6 LCN10 LCN12 CLIC3 LOC100128593 NPDC1 LRRC26 C9orf142 PMPCA EGFL7 MIR4674 TMEM141 C8G DPP7 UAP1L1
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	MIR3621 GRIN1 FUT7 LOC101930307 MAN1B1 SSNA1 SAPCD2 ANAPC2 MAN1B1-AS1 C9orf139 NPDC1 ENTPD2 TMEM210 LRRC26 DPP7 UAP1L1
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	ABCA2 C9orf139 NPDC1 FUT7 ENTPD2
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	MAMDC4 TRAF2 TUBB4B SAPCD2 FAM69B LINC01451 ENTPD2 LCN15 NDOR1 EDF1 C9orf173-AS1 SNORA17A MIR126 RABL6 TPRN SNHG7 CCDC183-AS1 C9orf172 AGPAT2 SSNA1 ANAPC2 C9orf139 RNF208 LCNL1 LCN8 MIR3621 PHPT1 TMEM203 CYSRT1 FBXW5 LOC101930307 MIR4479 MAN1B1 TOR4A NRARP RNF224 HSPC324 ABCA2 MIR4292 MAN1B1-AS1 PTGDS NELFB MIR6722 TMEM210 PRR31 GRIN1 SNORA17B CCDC183 FAM166A FUT7 SLC34A3 EXD3 STPG3 LCN6 LCN10 LCN12 CLIC3 LOC100128593 NPDC1 LRRC26 C9orf142 EGFL7 TMEM141 C8G DPP7 UAP1L1

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)

CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
leukocyte migration involved in immune response
protein glycosylation
protein N-linked glycosylation
fucosylation
L-fucose catabolic process

Function(s)

fucosyltransferase activity
alpha-(1->3)-fucosyltransferase activity