Hs01644036_cn

• Gene Symbol: CNOT3
• Assay Reference Genome Location: Chr.19:54142983 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 4849
• Gene Name: CCR4-NOT transcription complex subunit 3
• Gene Aliases: LENG2, NOT3, NOT3H
• Location: Chr.19:54137689-54155708 on Build GRCh38
• Assay Gene Location: Overlaps Exon 2 - Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CNOT3	NM_014516.3			NP_055331.1
	XM_005278279.1			XP_005278336.1
	XM_005278280.2			XP_005278337.1
	XM_005278281.1			XP_005278338.1
	XM_005278282.2			XP_005278339.1
	XM_011526992.1			XP_011525294.1
	XM_011526993.2			XP_011525295.1
	AB014591.1
	AF180474.1			AAF29828.1
	AK160386.1			BAD18729.1
	AK300434.1
	BC016474.1			AAH16474.1
	BQ439042.1
	DB076207.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3644782	Chr.19:54138064 - 54154026 on Build GRCh38	Gain	CNOT3
nsv515623	Chr.19:54102901 - 54179150 on Build GRCh38	Loss	NDUFA3 TMC4 TFPT PRPF31 MBOAT7 LENG1 CNOT3
nsv953613	Chr.19:54097214 - 54198733 on Build GRCh38	Deletion	TSEN34 NDUFA3 TMC4 TFPT PRPF31 OSCAR MBOAT7 LENG1 CNOT3
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	ZNF813 MIR523 TSEN34 MIR371B MIR516A1 MIR526B MIR935 MIR516B1 ZNF525 PRPF31 MIR1323 CACNG6 LOC105372457 MIR512-1 MIR525 MIR518B MIR520F ZNF665 LILRA6 TFPT VSTM1 MIR517C OSCAR DPRX MIR526A2 PRKCG MIR520G MIR522 LILRB5 MIR4752 ZNF765 MIR517B MIR517A CACNG7 MIR516A2 MIR520C ZNF331 MIR518A1 CNOT3 MIR515-1 MIR520E MIR1283-1 MIR371A MIR520D MIR515-2 MIR498 MIR1283-2 MIR518E MIR521-2 MIR519E MIR527 CACNG8 MIR520A MBOAT7 LENG1 MIR512-2 ZNF845 MIR526A1 BIRC8 MIR518D MIR519D FAM90A27P MIR519A2 MIR519C TPM3P9 MIR519B ZNF677 MIR518C VN1R4 LILRB3 MIR373 LILRA5 MIR372 MIR524 RPS9 MIR518F LILRB2 NLRP12 VN1R2 TARM1 MIR520H NDUFA3 TMC4 MIR516B2 ZNF761 MIR521-1 MIR518A2 LOC284379 MYADM MIR519A1 ZNF818P MIR520B

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

general transcription factor

Gene Ontology Categories:

Process(es)

nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
nuclear-transcribed mRNA poly(A) tail shortening
trophectodermal cell differentiation
transcription, DNA-templated
regulation of transcription, DNA-templated
DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
negative regulation of translation
gene silencing by RNA
regulation of stem cell population maintenance

Function(s)

protein binding