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See other TRIM39 CNV Assays ›
Gene Symbol
TRIM39
Assay Reference Genome
Location

Chr.6:30341971 on build GRCh38
Cytoband
6p22.1
Assay ID Hs01647097_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 56658

Gene Name:

 tripartite motif containing 39

Gene Aliases:

 RNF23, TFP, TRIM39B

Location:

 Chr.6:30326844-30343729 on Build GRCh38

Assay Gene Location:

 Within Exon 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM39 NM_021253.3 9 1581 NP_067076.2
NM_172016.2 8 1805 NP_742013.1
AB046381.1 8 1436 BAB16374.1
AK292512.1 9 1498
AX776007.1 8 1371 CAE11703.1
BC007661.2 8 1362 AAH07661.1
BC034985.1 8 1778 AAH34985.1
BT007370.1 6 1179 AAP36034.1

Target Gene Details

Entrez Gene ID:

 202658

Gene Name:

 TRIM39-RPP21 readthrough

Gene Aliases:

 TRIM39R

Location:

 Chr.6:30329311-30346858 on Build GRCh38

Assay Gene Location:

 Within Intron 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM39-RPP21 NM_001199119.1 NP_001186048.1
AI805914.1
EU012025.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion MDC1 HCG27 MIR6891 PSORS1C1 TCF19 ZNRD1ASP TRIM31 PPP1R11 MIR4640 PSORS1C3 OR2H1 GNL1 PPP1R18 UBD C6orf15 C6orf136 CCHCR1 LINC01015 TRIM15 IFITM4P TRIM26 VARS2 HLA-E LOC554223 DHX16 ABCF1 HLA-L GTF2H4 OR12D3 OR2H2 HCG20 MIR877 LINC00243 PPP1R10 LOC105375014 ATAT1 FLOT1 HLA-H GABBR1 SNORD32B HCG18 HCG4B ZNRD1 HLA-A TRIM31-AS1 OR14J1 OR10C1 HLA-K NRM MAS1L HLA-F-AS1 MDC1-AS1 HLA-F HCG17 IER3 HCG22 HLA-G MUC21 MRPS18B PSORS1C2 HCG4 MOG HLA-C HLA-J OR5V1 POU5F1 TUBB OR11A1 CDSN MICA HCG9 DDR1 TRIM39-RPP21 RPP21 OR12D2 TRIM39 OR2J2 PRR3 MUC22 HCG8 HLA-B RNF39 DPCR1 LOC101929006 SFTA2 TRIM10 TRIM40 ZFP57
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion MDC1 HCG27 PSORS1C1 TCF19 LOC100129636 ZNRD1ASP TRIM31 PPP1R11 MIR4640 PSORS1C3 OR2H1 GNL1 PPP1R18 UBD C6orf15 C6orf136 CCHCR1 LINC01015 TRIM15 IFITM4P TRIM26 VARS2 ZNF311 HLA-E LOC554223 DHX16 ABCF1 HLA-L GTF2H4 OR12D3 HCG16 OR2H2 LINC01556 HCG20 LINC01623 LINC00533 MIR877 LINC00243 PPP1R10 LOC105375014 ATAT1 FLOT1 HLA-H GABBR1 SNORD32B HCG18 HCG4B ZNRD1 HLA-A TRIM31-AS1 OR14J1 OR10C1 HLA-K NRM MAS1L OR2B3 HLA-F-AS1 MDC1-AS1 HLA-F HCG17 IER3 HCG22 HCG14 HLA-G OR2J3 MUC21 MRPS18B PSORS1C2 HCG4 MOG HLA-J OR5V1 POU5F1 TUBB OR11A1 TRIM27 CDSN OR2W1 HCG9 DDR1 TRIM39-RPP21 RPP21 OR12D2 TRIM39 OR2J2 PRR3 MUC22 HCG8 RNF39 DPCR1 LOC101929006 SFTA2 TRIM10 TRIM40 ZFP57
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion MDC1 HCG27 PSORS1C1 TCF19 ZNRD1ASP TRIM31 PPP1R11 MIR4640 PSORS1C3 GNL1 PPP1R18 C6orf15 C6orf136 CCHCR1 TRIM15 IFITM4P TRIM26 VARS2 HLA-E LOC554223 DHX16 ABCF1 HLA-L GTF2H4 HCG20 MIR877 LINC00243 PPP1R10 LOC105375014 ATAT1 FLOT1 HLA-H HCG18 HCG4B ZNRD1 HLA-A TRIM31-AS1 HLA-K NRM HLA-F-AS1 MDC1-AS1 HLA-F HCG17 IER3 HCG22 HLA-G MUC21 MRPS18B PSORS1C2 HCG4 HLA-C HLA-J POU5F1 TUBB CDSN HCG9 DDR1 TRIM39-RPP21 RPP21 TRIM39 PRR3 MUC22 HCG8 RNF39 DPCR1 SFTA2 TRIM10 TRIM40
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss MDC1 HCG27 PSORS1C1 TCF19 ZNRD1ASP TRIM31 PPP1R11 MIR4640 PSORS1C3 GNL1 PPP1R18 C6orf15 C6orf136 CCHCR1 TRIM15 TRIM26 VARS2 HLA-E DHX16 ABCF1 HLA-L GTF2H4 HCG20 MIR877 LINC00243 PPP1R10 LOC105375014 ATAT1 FLOT1 HLA-H HCG18 HCG4B ZNRD1 HLA-A TRIM31-AS1 HLA-K NRM MDC1-AS1 HCG17 IER3 HCG22 MUC21 MRPS18B PSORS1C2 HLA-C HLA-J POU5F1 TUBB CDSN HCG9 DDR1 TRIM39-RPP21 RPP21 TRIM39 PRR3 MUC22 HCG8 RNF39 DPCR1 SFTA2 TRIM10 TRIM40
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication MDC1 HCG27 MIR6891 PSORS1C1 TCF19 ZNRD1ASP TRIM31 PPP1R11 MIR4640 PSORS1C3 LOC102725068 GNL1 PPP1R18 C6orf15 C6orf136 CCHCR1 TRIM15 TRIM26 VARS2 HLA-E DHX16 ABCF1 HLA-L GTF2H4 HCG20 MIR877 LINC00243 PPP1R10 LOC105375014 ATAT1 FLOT1 HCG18 ZNRD1 TRIM31-AS1 HCG26 NRM MDC1-AS1 HCG17 IER3 HCG22 HCP5 MUC21 MRPS18B PSORS1C2 HLA-C HLA-J POU5F1 TUBB CDSN MICA DDR1 TRIM39-RPP21 RPP21 TRIM39 PRR3 MUC22 HCG8 HLA-B RNF39 DPCR1 SFTA2 TRIM10 TRIM40
nsv5241 Chr.6:30333124 - 30367656 on Build GRCh38 Insertion TRIM39-RPP21 RPP21 TRIM39

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