Hs01702926_cn

• Gene Symbol: XKR5
• Assay Reference Genome Location: Chr.8:6811755 on build GRCh38
• Cytoband: 8p23.1

Target Gene Details

• Entrez Gene ID: 389610
• Gene Name: XK related 5
• Gene Aliases: HARL2754, UNQ2754, XRG5A, XRG5BM
• Location: Chr.8:6808517-6835644 on Build GRCh38
• Assay Gene Location: Within Exon 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
XKR5	NM_001289973.1	8	1793	NP_001276902.1
	NM_207411.4	7	1655	NP_997294.3
	XM_011534750.2	3	2161	XP_011533052.1
	XM_017013401.1	6	2074	XP_016868890.1
	XM_017013402.1	5	1866	XP_016868891.1
	AY358489.1	7	1526	AAQ88853.1
	AY534242.1	7	1655	AAT07091.1
	AY534243.1	8	1647	AAT07092.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1021684	Chr.8:6492570 - 6951933 on Build GRCh38	Loss	MIR8055 DEFA6 DEFA4 MIR4659B XKR5 ANGPT2 MCPH1 AGPAT5 DEFB1 MCPH1-AS1 GS1-24F4.2 MIR4659A DEFA8P
nsv610004	Chr.8:6544845 - 6915391 on Build GRCh38	Gain	MIR8055 MCPH1 AGPAT5 DEFB1 MCPH1-AS1 GS1-24F4.2 MIR4659B MIR4659A XKR5 ANGPT2
nsv1025976	Chr.8:6615427 - 6829450 on Build GRCh38	Loss	MIR8055 MCPH1 AGPAT5 MCPH1-AS1 MIR4659B MIR4659A XKR5
esv3576520	Chr.8:6794391 - 7186524 on Build GRCh38	Gain	DEFA10P DEFT1P2 DEFA3 DEFA6 DEFA4 DEFA7P DEFA1 XKR5 DEFA1B DEFA9P DEFA11P DEFB1 GS1-24F4.2 DEFT1P DEFA8P DEFA5
esv2422383	Chr.8:6504868 - 6924071 on Build GRCh38	Duplication	MIR8055 MCPH1 AGPAT5 DEFB1 MCPH1-AS1 GS1-24F4.2 MIR4659B MIR4659A XKR5 ANGPT2
nsv831220	Chr.8:6670324 - 6870969 on Build GRCh38	Gain	AGPAT5 DEFB1 MCPH1-AS1 GS1-24F4.2 MIR4659B MIR4659A XKR5
nsv610006	Chr.8:6710680 - 7063882 on Build GRCh38	Gain	DEFA10P DEFT1P2 DEFA3 DEFA6 DEFA4 MIR4659B DEFA7P DEFA1 XKR5 DEFA1B DEFA9P DEFA11P AGPAT5 DEFB1 GS1-24F4.2 MIR4659A DEFT1P DEFA8P DEFA5
nsv1031577	Chr.8:6712833 - 8008628 on Build GRCh38	Gain	DEFA10P USP17L1 FAM66E DEFA4 DEFA1 DEFA1B DEFB106A FAM66B DEFB104A MIR4659A DEFB106B DEFT1P ZNF705G SPAG11B DEFB109P1B DEFB4A OR7E125P USP17L8 XKR5 USP17L4 GS1-24F4.2 LOC107986910 FAM90A7P DEFA5 DEFT1P2 DEFA3 ZNF705B SPAG11A DEFA7P USP17L3 OR7E154P LOC101929400 DEFB105B LOC101928095 DEFB108P1 DEFB104B AGPAT5 FAM90A10P DEFB103B DEFA6 MIR4659B DEFB107A LINC00965 DEFB105A DEFA9P DEFB107B DEFB4B PRR23D2 DEFA11P DEFB1 DEFB103A PRR23D1 DEFA8P
nsv465437	Chr.8:6797870 - 6971563 on Build GRCh38	Gain	DEFA10P DEFB1 DEFA6 DEFA4 GS1-24F4.2 XKR5 DEFA9P DEFA8P
esv2752262	Chr.8:6781378 - 7153553 on Build GRCh38	Gain	DEFA10P DEFT1P2 DEFA3 DEFA6 DEFA4 DEFA7P DEFA1 XKR5 DEFA1B DEFA9P DEFA11P DEFB1 GS1-24F4.2 DEFT1P DEFA8P DEFA5
dgv6876n100	Chr.8:6687977 - 6812428 on Build GRCh38	Loss	AGPAT5 MCPH1-AS1 MIR4659B MIR4659A XKR5

More Information

Additional Information:

For this assay, SNP(s) [rs373562602] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation