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See other TRIM39 CNV Assays ›
Gene Symbol
TRIM39
Assay Reference Genome
Location

Chr.6:30340290 on build GRCh38
Cytoband
6p22.1
Assay ID Hs01710959_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 56658

Gene Name:

 tripartite motif containing 39

Gene Aliases:

 RNF23, TFP, TRIM39B

Location:

 Chr.6:30326844-30343729 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 7 - Exon 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM39 NM_021253.3 NP_067076.2
NM_172016.2 NP_742013.1
AB046381.1 BAB16374.1
AK292512.1
AX776007.1 CAE11703.1
BC007661.2 AAH07661.1
BC034985.1 AAH34985.1
BT007370.1 AAP36034.1

Target Gene Details

Entrez Gene ID:

 202658

Gene Name:

 TRIM39-RPP21 readthrough

Gene Aliases:

 TRIM39R

Location:

 Chr.6:30329311-30346858 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM39-RPP21 NM_001199119.1 NP_001186048.1
AI805914.1
EU012025.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion LOC101929006 LOC554223 RNF39 RPP21 PPP1R18 HCG4B TRIM26 POU5F1 OR2H2 HLA-H TRIM39-RPP21 OR10C1 OR12D3 HLA-C CDSN MAS1L C6orf15 HLA-B MICA HCG4 MIR4640 OR14J1 HCG17 MUC22 HCG27 PPP1R10 TRIM39 TCF19 OR2H1 HLA-K GNL1 HLA-J PRR3 OR12D2 TUBB HCG22 C6orf136 ZNRD1ASP CCHCR1 UBD MDC1 MIR877 MUC21 OR11A1 TRIM10 GABBR1 TRIM40 LINC00243 ZNRD1 HLA-G MIR6891 HLA-A PPP1R11 ATAT1 IER3 PSORS1C2 HCG8 OR5V1 TRIM15 ZFP57 MRPS18B ABCF1 MDC1-AS1 HLA-E LOC105375014 HCG9 DDR1 NRM HCG20 PSORS1C1 IFITM4P HCG18 MOG DPCR1 TRIM31-AS1 SNORD32B SFTA2 OR2J2 LINC01015 HLA-F-AS1 DHX16 HLA-F GTF2H4 VARS2 TRIM31 HLA-L PSORS1C3 FLOT1
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion LOC101929006 LOC554223 RNF39 RPP21 PPP1R18 HCG4B LINC01556 TRIM26 POU5F1 TRIM27 OR2H2 HLA-H TRIM39-RPP21 OR10C1 OR12D3 OR2W1 CDSN MAS1L C6orf15 HCG4 MIR4640 OR14J1 HCG17 MUC22 HCG27 PPP1R10 TRIM39 TCF19 LOC100129636 OR2H1 HLA-K GNL1 HLA-J PRR3 OR12D2 TUBB HCG16 LINC01623 HCG22 C6orf136 ZNRD1ASP CCHCR1 UBD MDC1 MIR877 MUC21 OR11A1 TRIM10 GABBR1 TRIM40 HCG14 LINC00243 ZNRD1 HLA-G HLA-A PPP1R11 ATAT1 IER3 OR2J3 PSORS1C2 HCG8 OR2B3 OR5V1 TRIM15 ZFP57 ZNF311 MRPS18B ABCF1 MDC1-AS1 HLA-E LOC105375014 HCG9 DDR1 NRM HCG20 PSORS1C1 IFITM4P HCG18 MOG DPCR1 TRIM31-AS1 SNORD32B SFTA2 OR2J2 LINC01015 HLA-F-AS1 DHX16 HLA-F GTF2H4 VARS2 TRIM31 HLA-L PSORS1C3 LINC00533 FLOT1
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion LOC554223 RNF39 RPP21 PPP1R18 HCG4B TRIM26 POU5F1 HLA-H TRIM39-RPP21 HLA-C CDSN C6orf15 HCG4 MIR4640 HCG17 MUC22 HCG27 PPP1R10 TRIM39 TCF19 HLA-K GNL1 HLA-J PRR3 TUBB HCG22 C6orf136 ZNRD1ASP CCHCR1 MDC1 MIR877 MUC21 TRIM10 TRIM40 LINC00243 ZNRD1 HLA-G HLA-A PPP1R11 ATAT1 IER3 PSORS1C2 HCG8 TRIM15 MRPS18B ABCF1 MDC1-AS1 HLA-E LOC105375014 HCG9 DDR1 NRM HCG20 PSORS1C1 IFITM4P HCG18 DPCR1 TRIM31-AS1 SFTA2 HLA-F-AS1 DHX16 HLA-F GTF2H4 VARS2 TRIM31 HLA-L PSORS1C3 FLOT1
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss RNF39 RPP21 PPP1R18 HCG4B TRIM26 POU5F1 HLA-H TRIM39-RPP21 HLA-C CDSN C6orf15 MIR4640 HCG17 MUC22 HCG27 PPP1R10 TRIM39 TCF19 HLA-K GNL1 HLA-J PRR3 TUBB HCG22 C6orf136 ZNRD1ASP CCHCR1 MDC1 MIR877 MUC21 TRIM10 TRIM40 LINC00243 ZNRD1 HLA-A PPP1R11 ATAT1 IER3 PSORS1C2 HCG8 TRIM15 MRPS18B ABCF1 MDC1-AS1 HLA-E LOC105375014 HCG9 DDR1 NRM HCG20 PSORS1C1 HCG18 DPCR1 TRIM31-AS1 SFTA2 DHX16 GTF2H4 VARS2 TRIM31 HLA-L PSORS1C3 FLOT1
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication RNF39 RPP21 PPP1R18 TRIM26 POU5F1 TRIM39-RPP21 HLA-C LOC102725068 CDSN C6orf15 HLA-B MICA MIR4640 HCG17 MUC22 HCG27 PPP1R10 TRIM39 TCF19 GNL1 HLA-J PRR3 TUBB HCG22 C6orf136 ZNRD1ASP CCHCR1 MDC1 MIR877 MUC21 TRIM10 TRIM40 LINC00243 ZNRD1 MIR6891 PPP1R11 ATAT1 IER3 PSORS1C2 HCG8 HCG26 TRIM15 HCP5 MRPS18B ABCF1 MDC1-AS1 HLA-E LOC105375014 DDR1 NRM HCG20 PSORS1C1 HCG18 DPCR1 TRIM31-AS1 SFTA2 DHX16 GTF2H4 VARS2 TRIM31 HLA-L PSORS1C3 FLOT1
nsv5241 Chr.6:30333124 - 30367656 on Build GRCh38 Insertion RPP21 TRIM39 TRIM39-RPP21

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