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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89739453 on build GRCh38
Cytoband
16q24.3
Assay ID Hs01711329_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 42 - Exon 42
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
X99226.1 CAA67610.1

Target Gene Details

Entrez Gene ID:

 92822

Gene Name:

 zinc finger protein 276

Gene Aliases:

 CENP-Z, CENPZ, ZADT, ZFP276, ZNF477

Location:

 Chr.16:89720368-89740925 on Build GRCh38

Assay Gene Location:

 Within Exon 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ZNF276 NM_001113525.1 11 3149 NP_001106997.1
NM_152287.3 11 3139 NP_689500.2
NR_110122.1 11 3224
NR_110126.1 11 3107
NR_110128.1 11 3030
NR_110129.1 11 3119
XM_017023890.1 10 3074 XP_016879379.1
AK056405.1 11 3175
AK096004.1 1 911
BC107603.1 11 2964 AAI07604.1
BM972950.1 1 468
BQ432535.1 1 93

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion FANCA ZNF276 VPS9D1 VPS9D1-AS1
nsv573744 Chr.16:89738447 - 89915950 on Build GRCh38 Loss FANCA ZNF276 LOC105371419 TCF25 LOC107984817 SPIRE2
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion FANCA ZNF276 SPATA2L VPS9D1 CDK10 VPS9D1-AS1
nsv573743 Chr.16:89664419 - 89853617 on Build GRCh38 Gain FANCA ZNF276 LOC105371419 SPATA2L VPS9D1 LOC107984817 CDK10 VPS9D1-AS1 SPATA33 SPIRE2
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss DBNDD1 ZNF276 GAS8-AS1 LOC105371419 SPATA2L TUBB3 LOC107984817 DEF8 SPATA33 SPIRE2 GAS8 CHMP1A FANCA CENPBD1 TCF25 VPS9D1 MC1R DPEP1 CDK10 AFG3L1P VPS9D1-AS1
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss ANKRD11 LOC105371419 LOC107984817 DEF8 SPG7 SPATA33 LOC101927817 GAS8 LOC100287036 CHMP1A LOC105371414 CENPBD1 ZNF778 FAM157C SNORD68 VPS9D1 MC1R DBNDD1 PRDM7 RPL13 ZNF276 GAS8-AS1 SPATA2L TUBB3 CPNE7 SPIRE2 FANCA TCF25 TUBB8P7 DPEP1 URAHP CDK10 AFG3L1P VPS9D1-AS1
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss FANCA ZNF276 LOC105371419 LOC107984817 SPIRE2
nsv833330 Chr.16:89678466 - 89741783 on Build GRCh38 Loss FANCA ZNF276 SPATA2L VPS9D1 CDK10 VPS9D1-AS1
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss IL17C CTU2 SNAI3-AS1 LOC105371419 CYBA DEF8 SPG7 SPATA33 MIR4722 GAS8 SNORD68 PABPN1L VPS9D1 MC1R CDT1 LOC107987238 DBNDD1 PRDM7 RPL13 LOC101927793 GALNS GAS8-AS1 SPATA2L TUBB3 CPNE7 LOC339059 CDH15 LOC100289580 SNAI3 LOC400558 TCF25 TUBB8P7 DPEP1 URAHP RNF166 CDK10 ANKRD11 PIEZO1 LOC107984817 LOC100129697 LOC105371409 LOC101927817 LINC00304 LOC100287036 CHMP1A LOC105371414 CENPBD1 ZNF778 FAM157C SLC22A31 CBFA2T3 ZNF276 SPIRE2 MVD ACSF3 FANCA TRAPPC2L APRT AFG3L1P VPS9D1-AS1
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion RPL13 ZNF276 SPATA2L SPG7 SPATA33 CPNE7 CHMP1A FANCA SNORD68 VPS9D1 DPEP1 CDK10 VPS9D1-AS1

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