Genomic Map
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Target Gene Details
Entrez Gene ID: | 199990 |
Gene Name: | Fanconi anemia core complex associated protein 20 |
Gene Aliases: |
C1orf86, FP7162 |
Location: |
Chr.1:2184460-2212720 on Build GRCh38 |
Assay Gene Location: | Within Exon 16 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| FAAP20 | NM_001146310.1 | 8 | 1798 | NP_001139782.1 |
| NM_001256945.1 | 3 | 928 | NP_001243874.1 | |
| NM_001282671.1 | 8 | 1879 | NP_001269600.1 | |
| NM_001282672.1 | 7 | 1748 | NP_001269601.1 | |
| NM_001282673.1 | 4 | 1064 | NP_001269602.1 | |
| XM_017000554.1 | 4 | 1039 | XP_016856043.1 | |
| AF469129.1 | 8 | 1845 | AAP97719.1 | |
| AK055593.1 | 7 | 1748 | BAB70965.1 | |
| AK127994.1 | 8 | 1798 | BAC87220.1 |
Target Gene Details
Entrez Gene ID: | 5590 |
Gene Name: | protein kinase C zeta |
Gene Aliases: |
PKC-ZETA, PKC2 |
Location: |
Chr.1:2050470-2185395 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 27 - Exon 28 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| PRKCZ | NM_001033581.1 | NP_001028753.1 | ||
| NM_001033582.1 | NP_001028754.1 | |||
| NM_001242874.1 | NP_001229803.1 | |||
| NM_002744.4 | NP_002735.3 | |||
| XM_017001790.1 | XP_016857279.1 | |||
| XM_017001791.1 | XP_016857280.1 | |||
| XM_017001796.1 | XP_016857285.1 | |||
| XM_017001798.1 | XP_016857287.1 | |||
| XM_017001799.1 | XP_016857288.1 | |||
| XM_017001801.1 | XP_016857290.1 | |||
| XM_017001804.1 | XP_016857293.1 | |||
| XM_017001805.1 | XP_016857294.1 | |||
| AK097627.1 | ||||
| AK131526.1 | ||||
| AK290995.1 | ||||
| AK294649.1 | ||||
| AK294782.1 | ||||
| AK302160.1 | ||||
| BC008058.2 | AAH08058.1 | |||
| BC014270.2 | AAH14270.1 | |||
| BT007082.1 | AAP35745.1 | |||
| L14283.1 | AAA36488.1 | |||
| Z15108.1 | CAA78813.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv461727 | Chr.1:2151050 - 2251031 on Build GRCh38 | Loss |
 SKI
PRKCZ
LOC105378592
FAAP20
LOC100506504
|
| nsv482937 | Chr.1:10001 - 2368561 on Build GRCh38 | Loss |
DDX11L1
FAM87B
LOC100287934
LOC148413
LOC105378949
MMP23B
PRKCZ
SCNN1D
LOC105378589
GNB1
OR4F16
LOC100129534
OR4F5
LOC284600
MIR429
CPSF3L
TNFRSF4
LOC105378592
LOC107985729
MIR6859-2
ATAD3B
LOC100133331
LOC101928626
ANKRD65
VWA1
MIR6727
LOC100288175
LOC105378948
LINC00115
MIR6723
LOC105378947
LOC100506504
MIR6859-1
FAM138A
SLC35E2
TNFRSF18
LINC01128
GABRD
LOC100132287
AURKAIP1
HES4
C1orf159
KLHL17
LOC105378591
MIB2
AGRN
SSU72
CFAP74
MIR200A
LOC107984841
SDF4
CALML6
MIR6726
LOC100288069
UBE2J2
LOC100130417
MXRA8
SAMD11
FNDC10
LOC100134822
NOC2L
ATAD3C
MRPL20
TAS1R3
PLEKHN1
ACAP3
TTLL10-AS1
MIR200B
TTLL10
PERM1
SKI
CDK11A
FAM41C
RNF223
CCNL2
LOC107985728
MIR6808
ATAD3A
TMEM240
MIR1302-2
CDK11B
PUSL1
LOC102724312
MTND1P23
FAAP20
TMEM88B
MTND2P28
OR4F29
B3GALT6
LOC102725121
LINC01342
WASH7P
MMP23A
CPTP
TMEM52
DVL1
NADK
LOC729737
MORN1
ISG15
SLC35E2B
FAM132A
|
| nsv951530 | Chr.1:2153662 - 2229961 on Build GRCh38 | Deletion |
SKI
PRKCZ
LOC105378592
FAAP20
LOC100506504
|
| nsv834557 | Chr.1:2117631 - 2311104 on Build GRCh38 | Loss |
SKI
PRKCZ
LOC105378592
FAAP20
LOC100506504
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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