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See other ARHGAP39 CNV Assays ›
Gene Symbol
ARHGAP39
Assay Reference Genome
Location

Chr.8:144529212 on build GRCh38
Cytoband
8q24.3
Assay ID Hs01865075_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 80728

Gene Name:

 Rho GTPase activating protein 39

Gene Aliases:

 CrGAP, Vilse

Location:

 Chr.8:144529179-144700520 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ARHGAP39 NM_001308207.1 12 5017 NP_001295136.1
NM_001308208.1 11 4670 NP_001295137.1
NM_025251.2 11 4636 NP_079527.1
XM_011517308.1 12 4917 XP_011515610.1
XM_011517309.1 12 4821 XP_011515611.1
XM_011517312.2 10 5455 XP_011515614.1
XM_017013870.1 13 5989 XP_016869359.1
XM_017013871.1 12 5048 XP_016869360.1
AB051475.1 12 5021
AK092501.1 7 2083
BC013071.2 5 1947 AAH13071.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv522459 Chr.8:144519234 - 144845293 on Build GRCh38 Loss C8orf82 ZNF34 MIR6850 LRRC14 ZNF7 RPL8 LRRC24 ZNF251 ZNF517 ARHGAP39 COMMD5
nsv612951 Chr.8:144479830 - 144677692 on Build GRCh38 Loss C8orf82 LRRC14 LOC101928953 LRRC24 PPP1R16A MFSD3 GPT ARHGAP39 RECQL4
nsv831489 Chr.8:144342140 - 144544026 on Build GRCh38 Loss C8orf82 CYHR1 FOXH1 VPS28 MIR6893 RECQL4 CPSF1 LOC101928902 LOC101928953 MFSD3 LRRC14 MIR939 TONSL PPP1R16A GPT SLC39A4 FBXL6 SLC52A2 TONSL-AS1 MIR6849 KIFC2 LRRC24 ADCK5 MIR1234 TMEM249 ARHGAP39
dgv1207n67 Chr.8:144498396 - 144532417 on Build GRCh38 Gain C8orf82 LRRC14 LOC101928953 LRRC24 PPP1R16A MFSD3 GPT ARHGAP39 RECQL4
nsv612940 Chr.8:144436292 - 144613673 on Build GRCh38 Loss C8orf82 CYHR1 FOXH1 LRRC14 TONSL PPP1R16A GPT RECQL4 TONSL-AS1 LOC101928953 KIFC2 LRRC24 MFSD3 ARHGAP39
nsv428208 Chr.8:144041826 - 144722291 on Build GRCh38 Gain C8orf82 CYHR1 FOXH1 VPS28 ZNF251 MIR6893 RECQL4 MIR6846 CPSF1 MIR7112 LOC101928902 MAF1 LOC101928953 OPLAH MFSD3 MIR6847 SCRT1 EXOSC4 BOP1 GPAA1 LRRC14 MIR939 TONSL PPP1R16A GPT DGAT1 SLC39A4 FBXL6 SPATC1 SLC52A2 TONSL-AS1 CYC1 SHARPIN MIR6848 HSF1 MIR6849 KIFC2 LRRC24 SCX ADCK5 MIR1234 TMEM249 WDR97 HGH1 SMPD5 ARHGAP39 MROH1

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More Information


Additional Information:

For this assay, SNP(s) [rs149527055] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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