Hs01875809_cn

• Gene Symbol: APOBR
• Assay Reference Genome Location: Chr.16:28498449 on build GRCh38
• Cytoband: 16p12.1

Target Gene Details

• Entrez Gene ID: 55911
• Gene Name: apolipoprotein B receptor
• Gene Aliases: APOB100R, APOB48R
• Location: Chr.16:28494649-28498970 on Build GRCh38
• Assay Gene Location: Overlaps Intron 3 - Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
APOBR	NM_018690.3			NP_061160.3
	AF141332.1			AAF76255.1
	AF141334.1			AAF78765.1
	AK025123.1
	AK075085.1
	BC119786.1
	BC119788.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv509608	Chr.16:28449797 - 28632895 on Build GRCh38	Insertion	CLN3 SGF29 APOBR SULT1A1 SULT1A2 IL27 NUPR1
esv2758640	Chr.16:28163817 - 29139232 on Build GRCh38	Gain+Loss	CD19 ATXN2L TUFM ATP2A1-AS1 NFATC2IP IL27 NUPR1 RRN3P2 SULT1A2 MIR4721 SBK1 SH2B1 NPIPB6 SGF29 SULT1A1 NPIPB9 XPO6 MIR4517 NPIPB8 EIF3CL SPNS1 MIR6862-1 EIF3C CLN3 LAT RABEP2 ATP2A1 APOBR MIR6862-2 LOC101928215 NPIP
nsv1059555	Chr.16:28373144 - 29195838 on Build GRCh38	Gain	CD19 ATXN2L TUFM ATP2A1-AS1 NFATC2IP IL27 NUPR1 RRN3P2 SULT1A2 MIR4721 SH2B1 SGF29 SULT1A1 NPIPB9 MIR4517 NPIPB8 EIF3CL SPNS1 MIR6862-1 EIF3C CLN3 LAT LOC107984832 RABEP2 ATP2A1 APOBR MIR6862-2 LOC101928215 NPIP
nsv833180	Chr.16:28346157 - 28574165 on Build GRCh38	Loss	CLN3 NPIPB6 SGF29 APOBR EIF3CL IL27 NUPR1 MIR6862-1
nsv9415	Chr.16:28468881 - 28498959 on Build GRCh38	Gain	CLN3 APOBR

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

triglyceride metabolic process
lipid transport
receptor-mediated endocytosis
cholesterol metabolic process

Function(s)

very-low-density lipoprotein particle receptor activity