Hs01892800_cn

• Gene Symbol: C9orf139
• Assay Reference Genome Location: Chr.9:137031597 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 401563
• Gene Name: chromosome 9 open reading frame 139
• Gene Aliases: -
• Location: Chr.9:137027464-137037770 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf139	NM_207511.2			NP_997394.1
	AK124899.1			BAC85986.1

Target Gene Details

• Entrez Gene ID: 2529
• Gene Name: fucosyltransferase 7
• Gene Aliases: FucT-VII
• Location: Chr.9:137030174-137032840 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FUT7	NM_004479.3	2	991	NP_004470.1
	AK313124.1	2	625
	BC074746.2	2	167	AAH74746.2
	BC086312.1	2	991	AAH86312.1
	U08112.1	2	279	AAA56869.1
	U11282.1	2	279	AAA20468.1
	X78031.1	2	264	CAA54962.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	LRRC26 LCNL1 UAP1L1 MIR3621 GRIN1 PRR31 MAN1B1-AS1 DPP7 LOC101930307 CLIC3 PTGDS MAN1B1 ABCA2 C9orf142 TMEM210 C9orf139 ENTPD2 FUT7 NPDC1 SAPCD2
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	MIR4479 UAP1L1 EXD3 MIR7114 NDOR1 PRR31 C9orf172 STPG3 C8G TRAF2 PTGDS NSMF CYSRT1 ENTPD2 SAPCD2 LRRC26 GRIN1 RABL6 SLC34A3 MAN1B1-AS1 FBXW5 ANAPC2 C9orf173-AS1 MAN1B1 C9orf142 NRARP CCDC183 SSNA1 PHPT1 CCDC183-AS1 DPP7 TMEM203 TMEM210 MAMDC4 EDF1 RNF208 NPDC1 LCN12 FAM166A LCNL1 MIR3621 TPRN MIR4292 LOC101930307 TOR4A CLIC3 RNF224 TUBB4B ABCA2 ENTPD8 C9orf139 FUT7 PNPLA7 NELFB NOXA1
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	LCNL1 UAP1L1 PRR31 MAN1B1-AS1 DPP7 C8G LOC101930307 CLIC3 PTGDS MAN1B1 ABCA2 C9orf142 C9orf139 ENTPD2 FUT7 NPDC1 LCN12 SAPCD2
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MIR4479 SNORA17A UAP1L1 MIR6722 FAM69B PRR31 C9orf172 C9orf163 C8G TRAF2 PTGDS HSPC324 SDCCAG3 ENTPD2 MIR4674 LINC01451 SAPCD2 SNAPC4 NALT1 LRRC26 EGFL7 SNORA17B SEC16A LCN10 GRIN1 RABL6 MAN1B1-AS1 NOTCH1 FBXW5 MAN1B1 MIR4673 PMPCA C9orf142 CCDC183 PHPT1 LCN8 CCDC183-AS1 AGPAT2 DNLZ CARD9 DPP7 LCN6 TMEM210 MIR126 MAMDC4 EDF1 NPDC1 LCN12 SNHG7 LCN15 LCNL1 INPP5E MIR3621 LOC100128593 MIR4292 LOC101930307 CLIC3 ABCA2 TMEM141 C9orf139 FUT7
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	LRRC26 UAP1L1 MIR3621 GRIN1 MAN1B1-AS1 ANAPC2 DPP7 LOC101930307 MAN1B1 TMEM210 C9orf139 ENTPD2 FUT7 SSNA1 NPDC1 SAPCD2
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	ABCA2 C9orf139 ENTPD2 FUT7 NPDC1
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	MIR4479 SNORA17A UAP1L1 EXD3 MIR6722 FAM69B NDOR1 PRR31 C9orf172 STPG3 C8G TRAF2 PTGDS HSPC324 CYSRT1 ENTPD2 LINC01451 SAPCD2 LRRC26 EGFL7 SNORA17B LCN10 GRIN1 RABL6 SLC34A3 MAN1B1-AS1 FBXW5 ANAPC2 C9orf173-AS1 MAN1B1 C9orf142 NRARP CCDC183 SSNA1 PHPT1 LCN8 CCDC183-AS1 AGPAT2 DPP7 TMEM203 LCN6 TMEM210 MIR126 MAMDC4 EDF1 RNF208 NPDC1 LCN12 SNHG7 FAM166A LCN15 LCNL1 MIR3621 LOC100128593 TPRN MIR4292 LOC101930307 TOR4A CLIC3 RNF224 TUBB4B ABCA2 TMEM141 C9orf139 FUT7 NELFB

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)

CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
leukocyte migration involved in immune response
protein glycosylation
protein N-linked glycosylation
fucosylation
L-fucose catabolic process

Function(s)

fucosyltransferase activity
alpha-(1->3)-fucosyltransferase activity