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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89739676 on build GRCh38
Cytoband
16q24.3
Assay ID Hs01892962_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Intron 41
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
X99226.1 CAA67610.1

Target Gene Details

Entrez Gene ID:

 92822

Gene Name:

 zinc finger protein 276

Gene Aliases:

 CENP-Z, CENPZ, ZADT, ZFP276, ZNF477

Location:

 Chr.16:89720368-89740925 on Build GRCh38

Assay Gene Location:

 Within Exon 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ZNF276 NM_001113525.1 11 3372 NP_001106997.1
NM_152287.3 11 3362 NP_689500.2
NR_110122.1 11 3447
NR_110126.1 11 3330
NR_110128.1 11 3253
NR_110129.1 11 3342
XM_017023890.1 10 3297 XP_016879379.1
AK056405.1 11 3398
AK096004.1 1 1134
BC107603.1 11 3187 AAI07604.1
BM972950.1 1 245
BQ432535.1 1 316

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion VPS9D1 ZNF276 VPS9D1-AS1 FANCA
nsv573744 Chr.16:89738447 - 89915950 on Build GRCh38 Loss TCF25 LOC105371419 ZNF276 SPIRE2 LOC107984817 FANCA
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion CDK10 VPS9D1 ZNF276 VPS9D1-AS1 SPATA2L FANCA
nsv573743 Chr.16:89664419 - 89853617 on Build GRCh38 Gain CDK10 LOC105371419 SPATA33 VPS9D1 ZNF276 SPIRE2 LOC107984817 VPS9D1-AS1 SPATA2L FANCA
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss TCF25 TUBB3 CHMP1A LOC105371419 SPATA33 DBNDD1 AFG3L1P ZNF276 SPIRE2 LOC107984817 FANCA GAS8-AS1 CDK10 DPEP1 CENPBD1 DEF8 VPS9D1 GAS8 VPS9D1-AS1 SPATA2L MC1R
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss CHMP1A LOC105371419 DBNDD1 SPG7 AFG3L1P LOC101927817 ZNF276 SPIRE2 PRDM7 FANCA GAS8-AS1 CDK10 DPEP1 LOC105371414 CENPBD1 DEF8 RPL13 VPS9D1 VPS9D1-AS1 SPATA2L URAHP TCF25 TUBB3 SPATA33 FAM157C ZNF778 LOC107984817 SNORD68 LOC100287036 CPNE7 ANKRD11 GAS8 MC1R TUBB8P7
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss LOC105371419 ZNF276 SPIRE2 LOC107984817 FANCA
nsv833330 Chr.16:89678466 - 89741783 on Build GRCh38 Loss CDK10 VPS9D1 ZNF276 VPS9D1-AS1 SPATA2L FANCA
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss LOC105371419 SNAI3 SPG7 SNAI3-AS1 AFG3L1P ZNF276 SPIRE2 PABPN1L GAS8-AS1 DPEP1 LOC105371414 LOC100289580 VPS9D1 LOC105371409 VPS9D1-AS1 SPATA2L ACSF3 TCF25 TUBB3 FAM157C ZNF778 CDH15 LOC107984817 CPNE7 APRT MIR4722 TUBB8P7 CHMP1A DBNDD1 PIEZO1 LOC100129697 LOC107987238 LOC101927817 CYBA PRDM7 FANCA LOC400558 CDK10 CENPBD1 DEF8 LOC101927793 RPL13 SLC22A31 URAHP CBFA2T3 SPATA33 CTU2 MVD SNORD68 RNF166 LOC339059 LOC100287036 LINC00304 TRAPPC2L IL17C GALNS ANKRD11 GAS8 CDT1 MC1R
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion CHMP1A SPATA33 SPG7 ZNF276 SNORD68 FANCA CDK10 DPEP1 CPNE7 RPL13 VPS9D1 VPS9D1-AS1 SPATA2L

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