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See other TRIM40 CNV Assays ›
Gene Symbol
TRIM40
Assay Reference Genome
Location

Chr.6:30137109 on build GRCh38
Cytoband
6p22.1
Assay ID Hs01893670_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 135644

Gene Name:

 tripartite motif containing 40

Gene Aliases:

 RNF35

Location:

 Chr.6:30135998-30148773 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM40 NM_001286633.1 2 459 NP_001273562.1
NM_138700.4 1 377 NP_619645.1
XM_011514305.1 2 890 XP_011512607.1
XM_011514306.1 3 756 XP_011512608.1
XM_011514308.1 2 890 XP_011512610.1
XM_011514309.1 2 890 XP_011512611.1
AF489517.1 1 100 AAM09503.1
BC060785.1 2 459 AAH60785.1
CB990357.1 2 486

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion HLA-A OR2J2 VARS2 HLA-F-AS1 HLA-C CCHCR1 MUC22 CDSN GTF2H4 MDC1 TRIM26 PPP1R10 HLA-K ZNRD1ASP MICA LINC01015 TRIM40 UBD HCG9 MIR6891 OR14J1 LOC554223 OR11A1 GNL1 LOC101929006 PPP1R18 HCG4B OR2H2 HCG8 MUC21 TRIM39 HCG20 HCG17 HLA-J MAS1L MRPS18B LOC105375014 RNF39 TCF19 C6orf136 TRIM10 PSORS1C3 RPP21 HLA-F NRM MOG PRR3 POU5F1 OR12D2 ZFP57 OR12D3 TRIM31 HLA-E LINC00243 HCG27 OR5V1 OR10C1 OR2H1 HLA-B DPCR1 HCG18 HLA-L HCG4 IER3 PSORS1C2 FLOT1 DHX16 HLA-G SFTA2 ZNRD1 MIR877 ATAT1 MDC1-AS1 SNORD32B IFITM4P TRIM31-AS1 GABBR1 DDR1 TRIM39-RPP21 ABCF1 HCG22 C6orf15 PPP1R11 TRIM15 MIR4640 HLA-H TUBB PSORS1C1
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion HLA-A HCG14 OR2J2 VARS2 HLA-F-AS1 CCHCR1 MUC22 TRIM27 CDSN GTF2H4 LOC100129636 OR2B3 MDC1 TRIM26 PPP1R10 HLA-K ZNRD1ASP LINC01015 TRIM40 UBD HCG9 OR14J1 LOC554223 OR11A1 GNL1 LOC101929006 PPP1R18 HCG4B OR2H2 HCG8 MUC21 TRIM39 HCG20 HCG17 HLA-J MAS1L HCG16 MRPS18B LOC105375014 RNF39 TCF19 C6orf136 TRIM10 PSORS1C3 RPP21 HLA-F NRM MOG PRR3 POU5F1 OR12D2 ZFP57 OR12D3 TRIM31 LINC00533 HLA-E LINC00243 HCG27 LINC01556 OR5V1 OR10C1 OR2H1 DPCR1 HCG18 HLA-L HCG4 IER3 PSORS1C2 FLOT1 DHX16 HLA-G SFTA2 ZNRD1 MIR877 ATAT1 MDC1-AS1 SNORD32B IFITM4P TRIM31-AS1 OR2J3 GABBR1 DDR1 TRIM39-RPP21 ABCF1 HCG22 C6orf15 OR2W1 PPP1R11 LINC01623 ZNF311 TRIM15 MIR4640 HLA-H TUBB PSORS1C1
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion HLA-A VARS2 HLA-F-AS1 HLA-C CCHCR1 MUC22 CDSN GTF2H4 MDC1 TRIM26 PPP1R10 HLA-K ZNRD1ASP TRIM40 HCG9 LOC554223 GNL1 PPP1R18 HCG4B HCG8 MUC21 TRIM39 HCG20 HCG17 HLA-J MRPS18B LOC105375014 RNF39 TCF19 C6orf136 TRIM10 PSORS1C3 RPP21 HLA-F NRM PRR3 POU5F1 TRIM31 HLA-E LINC00243 HCG27 DPCR1 HCG18 HLA-L HCG4 IER3 PSORS1C2 FLOT1 DHX16 HLA-G SFTA2 ZNRD1 MIR877 ATAT1 MDC1-AS1 IFITM4P TRIM31-AS1 DDR1 TRIM39-RPP21 ABCF1 HCG22 C6orf15 PPP1R11 TRIM15 MIR4640 HLA-H TUBB PSORS1C1
esv2731777 Chr.6:29943636 - 30260756 on Build GRCh38 Deletion HLA-A ZNRD1 HCG8 TRIM31-AS1 TRIM31 HCG17 TRIM26 HLA-J ZNRD1ASP PPP1R11 RNF39 HLA-L TRIM15 TRIM10 TRIM40 HCG9
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss HLA-A VARS2 HLA-C CCHCR1 MUC22 CDSN GTF2H4 MDC1 TRIM26 PPP1R10 HLA-K ZNRD1ASP TRIM40 HCG9 GNL1 PPP1R18 HCG4B HCG8 MUC21 TRIM39 HCG20 HCG17 HLA-J MRPS18B LOC105375014 RNF39 TCF19 C6orf136 TRIM10 PSORS1C3 RPP21 NRM PRR3 POU5F1 TRIM31 HLA-E LINC00243 HCG27 DPCR1 HCG18 HLA-L IER3 PSORS1C2 FLOT1 DHX16 SFTA2 ZNRD1 MIR877 ATAT1 MDC1-AS1 TRIM31-AS1 DDR1 TRIM39-RPP21 ABCF1 HCG22 C6orf15 PPP1R11 TRIM15 MIR4640 HLA-H TUBB PSORS1C1
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication VARS2 HLA-C LOC102725068 CCHCR1 MUC22 CDSN GTF2H4 MDC1 TRIM26 PPP1R10 ZNRD1ASP HCG26 MICA TRIM40 MIR6891 GNL1 PPP1R18 HCG8 MUC21 TRIM39 HCG20 HCG17 HLA-J MRPS18B LOC105375014 RNF39 TCF19 C6orf136 TRIM10 PSORS1C3 RPP21 NRM PRR3 POU5F1 TRIM31 HLA-E LINC00243 HCG27 HLA-B DPCR1 HCG18 HLA-L IER3 PSORS1C2 FLOT1 DHX16 SFTA2 ZNRD1 MIR877 ATAT1 MDC1-AS1 TRIM31-AS1 DDR1 TRIM39-RPP21 ABCF1 HCG22 C6orf15 PPP1R11 HCP5 TRIM15 MIR4640 TUBB PSORS1C1

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