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Gene Symbol
GPAA1
Assay Reference Genome
Location

Chr.8:144084426 on build GRCh38
Cytoband
8q24.3
Assay ID Hs02000103_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 8733

Gene Name:

 glycosylphosphatidylinositol anchor attachment 1

Gene Aliases:

 GAA1, hGAA1

Location:

 Chr.8:144082621-144086216 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 6 - Exon 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
GPAA1 NM_003801.3 NP_003792.1
AB002135.1 BAA82588.1
AB006969.1 BAA24035.1
AK312759.1
AL157437.1 CAB75660.2
BC003171.1 AAH03171.1
BC004129.2 AAH04129.1
BC006383.2 AAH06383.2

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2759651 Chr.8:144076281 - 144230741 on Build GRCh38 Gain MAF1 MROH1 SHARPIN HGH1 CYC1 MIR6847 WDR97 GPAA1 EXOSC4
nsv470249 Chr.8:143889098 - 144519234 on Build GRCh38 Loss ADCK5 PPP1R16A MIR6849 RECQL4 PARP10 MIR939 MIR661 SCX BOP1 DGAT1 TONSL WDR97 SLC39A4 FBXL6 TMEM249 CYHR1 GPAA1 HSF1 KIFC2 SHARPIN SCRT1 GRINA MIR6848 MFSD3 MIR6847 CPSF1 GPT MIR6893 MAF1 MROH1 PLEC HGH1 CYC1 OPLAH SLC52A2 MIR6846 SMPD5 TONSL-AS1 LOC101928953 LOC101928902 MIR1234 VPS28 FOXH1 MIR7112 LRRC14 SPATC1 EXOSC4
nsv612914 Chr.8:143972494 - 144120626 on Build GRCh38 Loss MAF1 PLEC PARP10 CYC1 WDR97 GPAA1 OPLAH MIR6846 SMPD5 SHARPIN GRINA MIR6847 SPATC1 EXOSC4
nsv950015 Chr.8:143866633 - 144125597 on Build GRCh38 Deletion MAF1 PLEC PARP10 MIR661 CYC1 EPPK1 WDR97 GPAA1 OPLAH MIR6846 SMPD5 SHARPIN GRINA MIR6847 SPATC1 EXOSC4
nsv1025071 Chr.8:144044224 - 144300847 on Build GRCh38 Gain MAF1 MROH1 HGH1 CYC1 SCX BOP1 WDR97 GPAA1 HSF1 OPLAH MIR6846 SMPD5 SHARPIN MIR7112 MIR6847 SPATC1 EXOSC4
esv29971 Chr.8:144068526 - 144172197 on Build GRCh38 Loss MAF1 MROH1 SHARPIN HGH1 CYC1 MIR6847 WDR97 GPAA1 EXOSC4
nsv612915 Chr.8:144007080 - 144224185 on Build GRCh38 Loss MAF1 MROH1 HGH1 CYC1 WDR97 GPAA1 OPLAH MIR6846 SMPD5 SHARPIN MIR6847 SPATC1 EXOSC4
nsv6447 Chr.8:144064665 - 144087389 on Build GRCh38 Insertion MIR6847 GPAA1 EXOSC4
nsv515809 Chr.8:143904439 - 144519234 on Build GRCh38 Gain+Loss ADCK5 PPP1R16A MIR6849 RECQL4 PARP10 MIR939 MIR661 SCX BOP1 DGAT1 TONSL WDR97 SLC39A4 FBXL6 TMEM249 CYHR1 GPAA1 HSF1 KIFC2 SHARPIN SCRT1 GRINA MIR6848 MFSD3 MIR6847 CPSF1 GPT MIR6893 MAF1 MROH1 PLEC HGH1 CYC1 OPLAH SLC52A2 MIR6846 SMPD5 TONSL-AS1 LOC101928953 LOC101928902 MIR1234 VPS28 FOXH1 MIR7112 LRRC14 SPATC1 EXOSC4
dgv12431n54 Chr.8:143845100 - 144161320 on Build GRCh38 Loss MAF1 MROH1 PLEC PARP10 HGH1 MIR661 CYC1 EPPK1 WDR97 GPAA1 OPLAH MIR6846 SMPD5 SHARPIN GRINA MIR6847 SPATC1 EXOSC4
nsv428208 Chr.8:144041826 - 144722291 on Build GRCh38 Gain ADCK5 ZNF251 PPP1R16A MIR6849 RECQL4 MIR939 SCX BOP1 DGAT1 TONSL WDR97 SLC39A4 FBXL6 TMEM249 CYHR1 GPAA1 HSF1 KIFC2 SHARPIN SCRT1 MIR6848 MFSD3 ARHGAP39 MIR6847 CPSF1 GPT MIR6893 MAF1 MROH1 C8orf82 HGH1 CYC1 OPLAH SLC52A2 MIR6846 LRRC24 SMPD5 TONSL-AS1 LOC101928953 LOC101928902 MIR1234 VPS28 FOXH1 MIR7112 LRRC14 SPATC1 EXOSC4
nsv470250 Chr.8:143917934 - 144097007 on Build GRCh38 Gain MIR6846 SMPD5 PLEC PARP10 MIR661 CYC1 GRINA MIR6847 SPATC1 GPAA1 EXOSC4 OPLAH
dgv12433n54 Chr.8:143902404 - 144120626 on Build GRCh38 Gain MAF1 PLEC PARP10 MIR661 CYC1 WDR97 GPAA1 OPLAH MIR6846 SMPD5 SHARPIN GRINA MIR6847 SPATC1 EXOSC4
nsv612906 Chr.8:143917935 - 144090784 on Build GRCh38 Loss MIR6846 SMPD5 PLEC PARP10 MIR661 GRINA MIR6847 SPATC1 GPAA1 EXOSC4 OPLAH

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More Information


Additional Information:

For this assay, SNP(s) [rs112703109] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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