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See other ZGPAT CNV Assays ›
Gene Symbol
ZGPAT
Assay Reference Genome
Location

Chr.20:63734309 on build GRCh38
Cytoband
20q13.33
Assay ID Hs02045861_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 84619

Gene Name:

 zinc finger CCCH-type and G-patch domain containing

Gene Aliases:

 GPATC6, GPATCH6, KIAA1847, ZC3H9, ZC3HDC9, ZIP

Location:

 Chr.20:63707442-63736142 on Build GRCh38

Assay Gene Location:

 Within Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ZGPAT NM_001083113.1 NP_001076582.1
NM_001195653.1 NP_001182582.1
NM_001195654.1 NP_001182583.1
NM_032527.4 NP_115916.3
NM_181485.2 NP_852150.2
AB058750.3
AK027878.1 BAB55426.1
AK074961.1 4 1549 BAC11317.1
AK307368.1
AK314726.1
BC019338.1 AAH19338.1
BC032612.1 AAH32612.1
KU178806.1
KU178807.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2722959 Chr.20:63715664 - 63806918 on Build GRCh38 Deletion ZBTB46 LIME1 ZGPAT SLC2A4RG
nsv1139762 Chr.20:63731048 - 63737647 on Build GRCh38 Duplication LIME1 ZGPAT
nsv586614 Chr.20:63725275 - 63741460 on Build GRCh38 Gain LIME1 ZGPAT SLC2A4RG
nsv953308 Chr.20:63650148 - 63831847 on Build GRCh38 Deletion ZBTB46 ZBTB46-AS1 TNFRSF6B ARFRP1 RTEL1-TNFRSF6B LIME1 RTEL1 ZGPAT STMN3 SLC2A4RG
nsv1160690 Chr.20:63639552 - 63744287 on Build GRCh38 Deletion ZBTB46 TNFRSF6B ARFRP1 RTEL1-TNFRSF6B LIME1 RTEL1 ZGPAT STMN3 SLC2A4RG
esv7227 Chr.20:63715550 - 63807161 on Build GRCh38 Loss ZBTB46 LIME1 ZGPAT SLC2A4RG
nsv428381 Chr.20:63583375 - 64334167 on Build GRCh38 Gain+Loss TNFRSF6B DNAJC5 LIME1 RTEL1 STMN3 SAMD10 PRPF6 PCMTD2 RGS19 ZNF512B MIR941-4 LINC00266-1 ARFRP1 MIR941-3 MIR647 TCEA2 MIR6813 MIR941-1 ABHD16B ZGPAT NPBWR2 C20orf181 ZBTB46 SOX18 ZBTB46-AS1 MYT1 MIR1914 LKAAEAR1 OPRL1 UCKL1 MIR941-2 LINC00176 TPD52L2 GMEB2 LOC100505771 RTEL1-TNFRSF6B UCKL1-AS1 MIR941-5 SLC2A4RG
nsv586615 Chr.20:63734204 - 63741603 on Build GRCh38 Gain LIME1 ZGPAT SLC2A4RG
nsv1059142 Chr.20:63731978 - 63798885 on Build GRCh38 Gain ZBTB46 LIME1 ZGPAT SLC2A4RG
nsv470563 Chr.20:63486715 - 63793308 on Build GRCh38 Loss ZBTB46 TNFRSF6B PTK6 LIME1 FNDC11 RTEL1 STMN3 EEF1A2 GMEB2 LOC100505771 PPDPF ARFRP1 RTEL1-TNFRSF6B HELZ2 ZGPAT SRMS SLC2A4RG
esv2758806 Chr.20:63470996 - 63745014 on Build GRCh38 Gain+Loss ZBTB46 TNFRSF6B PTK6 LIME1 FNDC11 RTEL1 STMN3 KCNQ2 EEF1A2 GMEB2 LOC100505771 PPDPF ARFRP1 RTEL1-TNFRSF6B HELZ2 ZGPAT SRMS SLC2A4RG

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